Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Chmp3
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name charged multivesicular body protein 3
Also known as 25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24
Coordinate chr6:71520820-71559593
Strand +
Gene summary Predicted to enable identical protein binding activity; phospholipid binding activity; and ubiquitin-specific protease binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; late endosome to vacuole transport; and regulation of endosome size. Predicted to act upstream of or within cell division. Predicted to be located in endosome; midbody; and plasma membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Is expressed in brain; genitourinary system; and neural retinal epithelium. Orthologous to several human genes including RNF103-CHMP3 (RNF103-CHMP3 readthrough). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Chmp3

Retroname Coord Strand Genomic Region ENSG
Chmp3P1 chr1:35009144-35010010 + Intergenic
 ENSMUSG00000103760 UCSC
Chmp3P2 chr5:114375330-114375680 - Intragenic
 ENSMUSG00000084243 UCSC
Chmp3P3 chr18:6557044-6558175 + Intergenic
 ENSMUSG00000117425 UCSC

Expression

Transcript Sequences

>NM_001355675.1
GGCCTGCAGACCACCCGGAGGACTTGCCCTAGACCGGAAGGTTGTGTGCGGTGAACCGGGTCGGAGCCCCCAAAAAGTCCAGGCACCTGCCAGGTTAATGAATGGTCACTGAAGATCAGAAAGGAAATGAGAGTTGTTGACAGGCAAATAAGAGATAtccaaagagaagaagagaaagtaaaACGGTCTGTGAAAGATGCAGCCAAGAAGGGCCAAAAGGAAGTCTGTGTGGTTCTGGCCAAGGAGATGATCAGGTCAAGGAAAGCCGTGAGCAAGCTCTATGCCTCCAAAGCACACATGAACTCTGTGCTCATGGGCATGAAGAACCAACTCGCGGTCCTGCGAGTAGCTGGTTCTCTGCAGAAGAGCACAGAAGTGATGAAGGCAATGCAGAGTCTTGTGAAGATCCCAGAAATCCAGGCCACCATGCGGGAGCTGTCCAAAGAGATGATGAAGGCTGGAATCATAGAGGAGATGTTAGAGGATACATTTGAAAGCATGGATGAtcaagaagaaatggaagaagcaGCTGAGATGGAGATTGACAGAATCCTCTTTGAAATCACAGCAGGAGCCTTGGGCAAAGCACCCAGTAAAGTAACCGATGCCCTTCCTGAGCCTGAACCCGCAGGAGCGATGGCTGCCTccgaagagggagaagaggaagaagatgaagaggaccTGGAGGCTATGCAGTCACGGCTGGCCACACTCAGAAGCTAGGGCCACCCAGTTGGGGGTCTCAACTCTCTGGTGTCCTCCTCTAGGTGTGTATCTGGCCTCTGAGGAGTCACCATTTCTTGTATCTCTTGCACTACACCTCTGCTGTGAAGCATTACATTTGGAGAGGGTTCTGTGCTGGTATATCTTCACGATCTGCAGAGGATTTAAGGATTGCTTTTATGAAGGTGGTGTAATCAAATGTATTATTTTCAGGAGCATAAATAGCAGAAGTATCTTCCTTGGGGGAGGGCAAAGAAATCCATTTTCTCATGAAGCAATTTTGAGAAGAGTAGATTGAATGATGAGGACTCtatatttggtgtgtatgtgtaaaataatatattaatggATGTCAATAAACTTCTGCTTTAGCTCTTGGTCTCATTGTAAATGTCACATGCAATGAACTCAAGATATTAATCTCCCAGATTGTCTCAGTGTTGGCCTTGGAAAGAGGACATGCTATCTCCAAGCATCGGGACATGGGAGCTTAGCAGAAGTACCTTCAGCTCCGGGGCCGCTGGTCCTGCTCTTCACAGGCTGGTTGTGGGGGCCACTCTTGTGCATTTTGTCATTTGTCTAACCTTCGGGTTAACGTGCTGTGTTGACTGAATGACCATATCATACACTGGTGTGTACAAGGGAGTTTTTACAGCTGGTAGGCATTCTTCCCCACTGCAAGTGAAATGCAGGACAGTTAGATCTGGGATCAGGACTCTTGCAGTCCATCCCTGCTTGGAGCTAAGTGTCTTGTACCCAGGGACGTAGCCTTAACCATGAGCAGGAAGAGCTAACCAGGAAGAGGTTTGGATTATGcagtgaaacacacacagcagagcaTGCTTTAGATGCATTGAGAAATAGCCCAGCAGTAGCACTGTGTGGAGCAGTTTGAAAAGCTTTCTGGTATGCATGATCTTCACAAATGAGGACAGCTGTCATCTGAAGTCACAAACCCTAAAGTACAATAGCCAGTATCCGCCAGTATTGTACAGAATGGCTTTGTTACCCAAAACACAACCCATGTGCTGTTCATTGCTTCCTCTAATCCCTTGGCACCCACTGACCCGGTTGCTGTCTCCATGGGCTTTCCTTTCCCAGCCTTTCAGTATGTCTTCCCTCACGTGGTGATATGCATTTACGTTCCTCCGTGGATTCATGACTTGACTGTTCAGCCCTTCTCATTGAGCAGCGTTCCATTTTCTAGCTGTACCACAGCTTGTCTTGAAGGCCACCTGGACTGCTTCTGAGTTTGGGAGTTTGAAGCAATGTCTGTAGCAGGTTTCCCTGTGTGTTTTAATTCCTCTGGATACCAGAGAGCTCAACCCTGGGATCATGTGGTCAGCACAAACCTGTGCTGTAAGGTAAACCAGCCGTGCAGAGCACGTACTGTCCCCGTCTCAGGAGGAAGAGTTCTGCCTGCCATCCTGTGGCTTTGGCAGAATTTGTCATGAGGGATTTGTGTTGAAGTACCCTGGGCATGTTTTTATACTTGCCTTCTCTGTATCTTGTTTGAAAATGTTGACatagtggccttgaactcatgacctgtCTGCTCTACCACCACACTGAGCTTGCCGCCTGGATTTCTTCGTTGTTGGTGTTTGTTCATTTTATAACCtggattgtttgttttctgattatTCAAGTTTAAGGACCTCTTACAGATTTTGAACCAATCATCTATCAGATTATATCCTATTCTCTGTTCTATTCTCTCATTGTTGACTGTTTTTCAAAGCTGAaggtttcttttttacttttaataaaacCCTGCTTCTCAATTA
>NM_025783.4
GTACTAGCCCTGCTGCCGCCGCGCCCTTCTCTGGGCGTCTGAttcccttcctcccagccccGCCCAGGCGGCTGCCCGTGACCTGCCTGGGCGCAGGGAACGGAAAGTCGGAAGGGGTAAGAGGAGTTCAGTTCATCATGGGACTCTTTGGAAAAACCCAGGAGAAGCCTCCCAAAGAGCTGGTTAATGAATGGTCACTGAAGATCAGAAAGGAAATGAGAGTTGTTGACAGGCAAATAAGAGATAtccaaagagaagaagagaaagtaaaACGGTCTGTGAAAGATGCAGCCAAGAAGGGCCAAAAGGAAGTCTGTGTGGTTCTGGCCAAGGAGATGATCAGGTCAAGGAAAGCCGTGAGCAAGCTCTATGCCTCCAAAGCACACATGAACTCTGTGCTCATGGGCATGAAGAACCAACTCGCGGTCCTGCGAGTAGCTGGTTCTCTGCAGAAGAGCACAGAAGTGATGAAGGCAATGCAGAGTCTTGTGAAGATCCCAGAAATCCAGGCCACCATGCGGGAGCTGTCCAAAGAGATGATGAAGGCTGGAATCATAGAGGAGATGTTAGAGGATACATTTGAAAGCATGGATGAtcaagaagaaatggaagaagcaGCTGAGATGGAGATTGACAGAATCCTCTTTGAAATCACAGCAGGAGCCTTGGGCAAAGCACCCAGTAAAGTAACCGATGCCCTTCCTGAGCCTGAACCCGCAGGAGCGATGGCTGCCTccgaagagggagaagaggaagaagatgaagaggaccTGGAGGCTATGCAGTCACGGCTGGCCACACTCAGAAGCTAGGGCCACCCAGTTGGGGGTCTCAACTCTCTGGTGTCCTCCTCTAGGTGTGTATCTGGCCTCTGAGGAGTCACCATTTCTTGTATCTCTTGCACTACACCTCTGCTGTGAAGCATTACATTTGGAGAGGGTTCTGTGCTGGTATATCTTCACGATCTGCAGAGGATTTAAGGATTGCTTTTATGAAGGTGGTGTAATCAAATGTATTATTTTCAGGAGCATAAATAGCAGAAGTATCTTCCTTGGGGGAGGGCAAAGAAATCCATTTTCTCATGAAGCAATTTTGAGAAGAGTAGATTGAATGATGAGGACTCtatatttggtgtgtatgtgtaaaataatatattaatggATGTCAATAAACTTCTGCTTTAGCTCTTGGTCTCATTGTAAATGTCACATGCAATGAACTCAAGATATTAATCTCCCAGATTGTCTCAGTGTTGGCCTTGGAAAGAGGACATGCTATCTCCAAGCATCGGGACATGGGAGCTTAGCAGAAGTACCTTCAGCTCCGGGGCCGCTGGTCCTGCTCTTCACAGGCTGGTTGTGGGGGCCACTCTTGTGCATTTTGTCATTTGTCTAACCTTCGGGTTAACGTGCTGTGTTGACTGAATGACCATATCATACACTGGTGTGTACAAGGGAGTTTTTACAGCTGGTAGGCATTCTTCCCCACTGCAAGTGAAATGCAGGACAGTTAGATCTGGGATCAGGACTCTTGCAGTCCATCCCTGCTTGGAGCTAAGTGTCTTGTACCCAGGGACGTAGCCTTAACCATGAGCAGGAAGAGCTAACCAGGAAGAGGTTTGGATTATGcagtgaaacacacacagcagagcaTGCTTTAGATGCATTGAGAAATAGCCCAGCAGTAGCACTGTGTGGAGCAGTTTGAAAAGCTTTCTGGTATGCATGATCTTCACAAATGAGGACAGCTGTCATCTGAAGTCACAAACCCTAAAGTACAATAGCCAGTATCCGCCAGTATTGTACAGAATGGCTTTGTTACCCAAAACACAACCCATGTGCTGTTCATTGCTTCCTCTAATCCCTTGGCACCCACTGACCCGGTTGCTGTCTCCATGGGCTTTCCTTTCCCAGCCTTTCAGTATGTCTTCCCTCACGTGGTGATATGCATTTACGTTCCTCCGTGGATTCATGACTTGACTGTTCAGCCCTTCTCATTGAGCAGCGTTCCATTTTCTAGCTGTACCACAGCTTGTCTTGAAGGCCACCTGGACTGCTTCTGAGTTTGGGAGTTTGAAGCAATGTCTGTAGCAGGTTTCCCTGTGTGTTTTAATTCCTCTGGATACCAGAGAGCTCAACCCTGGGATCATGTGGTCAGCACAAACCTGTGCTGTAAGGTAAACCAGCCGTGCAGAGCACGTACTGTCCCCGTCTCAGGAGGAAGAGTTCTGCCTGCCATCCTGTGGCTTTGGCAGAATTTGTCATGAGGGATTTGTGTTGAAGTACCCTGGGCATGTTTTTATACTTGCCTTCTCTGTATCTTGTTTGAAAATGTTGACatagtggccttgaactcatgacctgtCTGCTCTACCACCACACTGAGCTTGCCGCCTGGATTTCTTCGTTGTTGGTGTTTGTTCATTTTATAACCtggattgtttgttttctgattatTCAAGTTTAAGGACCTCTTACAGATTTTGAACCAATCATCTATCAGATTATATCCTATTCTCTGTTCTATTCTCTCATTGTTGACTGTTTTTCAAAGCTGAaggtttcttttttacttttaataaaacCCTGCTTCTCAATTA