Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Crnkl1
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name crooked neck pre-mRNA splicing factor 1
Also known as 1200013P10Rik|5730590A01Rik|crn
Coordinate chr2:145759402-145776620
Strand -
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Is expressed in brain; olfactory epithelium; and spinal cord. Human ortholog(s) of this gene implicated in basal cell carcinoma. Orthologous to human CRNKL1 (crooked neck pre-mRNA splicing factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Crnkl1

Retroname Coord Strand Genomic Region ENSG
Crnkl1P1 chr6:23157943-23160030 - Intergenic
 ENSMUSG00000106989 UCSC
Crnkl1P2 chr6:50585646-50587663 + Intergenic
 ENSMUSG00000107418 UCSC

Expression

Transcript Sequences

>NM_025820.3
GTTTGTTGTGGCTGACTCTGTTGTGCCGGCCGGTTCGAAGTGCTTTTCTCAAGTCCGGTTGTCGGCCAGGATCGCTCGAGTTCCACGGCTGCAGTCATGGCAGCCTCCACGGCGGCCGGGAAACAGCGCATTCCTAAAGTGGCCAAGGTGAAGAACAAGGCGCCGGCCGAAGTGCAGATAACGGCCGAGCAGCTCCTCCGAGAAGCTAAAGAGAGAGAACTCGagctcctcccacctccacctcagcAGAAGATCACAGATGAGGAAGAATTAAACGATTACAAACTCCGGAAAAGGAAGACTTTTGAAGATAACATAAGAAAAAATAGGACTGTGATTAGCAACTGGATAAAATACGCACAATGGGAGGAAAGTCTAAAGGAAATTCAAAGGGCTCGATCCATATACGAGCGTGCTTTAGATGTCGACTACCGAAATATTACCCTCTGGCTGAAATATGCAGAAATGGAGATGAAGAACCGCCAGGTCAACCATGCCCGAAACATCTGGGACCGTGCCATCACAACTCTGCCACGCGTCAACCAGTTCTGGTATAAGTACACATACATGGAGGAGATGTTGGGCAACGTTGCTGGTGCCCGCCAGGTGTTTGAGCGCTGGATGGAATGGCAGCCTGAGGAGCAGGCCTGGCATTCCTACATCAACTTCGAGCTGAGATACAAAGAGGTGGAGCGGGCCCGCACCATCTATGAACGCTTTGTGCTCGTGCACCCTGCTGTGAAAAACTGGATCAAGTACGCAAGATTTGAAGAGAAGCATGCTTACTTTGCTCATGCGCGGAAAGTCTACGAGAGAGCGGTGGAGTTTTTTGGGGATGAGCATATGGACGAACACCTCTATGTGGCCTTTGCTAAATTTGAGGAAAACCAGAAAGAATTTGAAAGGGTACGAGTTATCTACAAATATGCCCTGGATAGGATTTCAAAACAAGAGGCCCAAGAACTCTTTAAAAACTATACCATCTTTGAGAAGAAGTTTGGTGACCGGAGGGGTATAGAAGACATCATCGTGAGCAAACGGAGGTTCCAGTATGAAGAAGAAGTGAAGGCTAATCCACACAATTATGATGCATGGTTTGATTATTTACGCTTGGTGGAAAGTGATGCGGAAGCTGACACTGTGCGGGAAGTCTATGAGAGAGCCATTGCCAATGTGCCACCCATCCAGGAGAAGAGACACTGGAAGCGCTACATCTACCTTTGGGTTAACTATGCACTCTATGAAGAGCTGGAAGCCAAGGATCCCGAGAGAACAAGACAGGTATATCAAGCGTCTTTGGAACTAATTCCTCACAAAAAGTTCACATTTGCCAAAATGTGGTTATATTATGCACAGTTTGAAATAAGACAGAAAAATCTGCCATTTGCCAGAAGAGCTTTGGGAACTTCCATAGGCAAATGTCCGAAGAACAAGTTATTCAAAGGATACATAGAACTGGAACTGCAGCTTCGAGAATTTGACAGATGCAGGAAGCTTTATGAAAAGTTTTTGGAATTTGGACCTGAAAATTGTACCTCATGGATTAAGTTTGCAGAATTAGAGACAATCCTTGGTGATATTGAGAGAGCTCGGGCAATCTATGAATTAGCCATCAGCCAGCCACGCTTGGATATGCCAGAGgtACTTTGGAAATCATATATTGATTTTGAGATTGAGCAGGAAGAAACTGAAAGAACACGAAACCTTTACCGACAATTGCTTCAGCGAACACAGCATGTCAAGgtaTGGATCAGTTTTGCTCAGTTTGAGTTATCGTCTGGGAAAGAAGGAAGTGTGGCTAAATGCAGACAGATTTATGAAGAAGCTAACAAAACCATGAGAAActgtgaagaaaaagaagagaggctTATGTTGCTGGAATCCTGGAGAAGTTTTGAAGATGAATTTGGCACAGTATCAGACAAGGAGAGAGTAGACAAACTCATGCCAGAAAAGgtcaagaagagaagaaaggtccAGGCCGACGATGGGTCTGACGCCGGGTGGGAAGAATACTATGACTACATCTTCCCAGAGGATGCTGCCAACCAGCCTAACCTCAAGCTCCTGGCCATGGCCAAGCTGTGGAAGaaacagcaacaggaaagagaagctgccGAACAGGATCCAGATAAGGACATTGATGAGAGTGAATCCTcatctttttaaatgttataattGCTTTTTATAAATGAACAGTTTAGAACTTTGACTCCtaaatgtttttatgtatttactcAGTAAGGAGTTGTTTGGCatctttgaattattttttaaaatgctcttGGGTTTAACTATGGGTGAGAAACTGCaagtaaaagaatttttttctaagttttgTTACTTGAGTCCGAGCATTTCTAGCATTTGCTCCTATTGTCTTTGTTAGATGGAGTTCATGTGCTTAGCACATACGTTGGGTCGAACTGCAGACTAAACTCAGTGTTCAAGGTCCATTCTCCAGGAATAGACACAGGTTTATCATGATGGTGTTCATGAATCTGAAACTTTTAGATTTCATGTCTCTAAAACCACAAAACTGGAGTCCAACTCTAACACCTCCATGTGGTGGCTGTACGTTTCcattgattttcagttttctcaaacAAGCAGTAGTATGGTGGCACCTCATTTTGATGATTCCATTAGAAAAGGAGTATGCTGATGTCAATCTTGTTCCAACAGCACACCTTCCCCTGCCCCTACTGCCTTTTAGCATCATGTGTCTACTTCTCATAGAATTAAATGGACTTGGGctagttttctctctgaataTCTGAACAGATTTATAGTGACTGTATTTTTTGACCCCAAGTCTTTGTCAGGAACATTTTAGTTTGGCTTCAGTTTTTCTCTCAAACTAGTTAAGTTTTGTAGTAGCTTGTTTAGAAAACAATGGCCTGCATTCACGGATGCTGAGGCAGTGTCCTATTGGATTTAttatgtaaatgtctgtgttaaGTATGATTCACCATTGCACTACTGCCAGTCCCAAGCTTTGTGAATTCTGCAGTTATAGTTGCCTAGAAACTATGTATCTCCCAACATGCCTCAGAATGTGTGAATTCTAACAACTGATGTTTAACAGTTGTCATTAAACAACAGGAGTCC