Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cir1
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name corepressor interacting with RBPJ, 1
Also known as 1700023B02Rik|2810021A19Rik|Cicr|Cir
Coordinate chr2:73114216-73142936
Strand -
Gene summary Predicted to enable histone deacetylase binding activity; protein kinase binding activity; and transcription corepressor activity. Acts upstream of or within in utero embryonic development. Predicted to be located in nuclear speck. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Predicted to colocalize with centrosome. Is expressed in genitourinary system and limb ectoderm. Orthologous to human CIR1 (corepressor interacting with RBPJ, CIR1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cir1

Retroname Coord Strand Genomic Region ENSG
Cir1P5 chr14:29749732-29750092 - Intragenic
ENSMUSG00000114705 UCSC
Cir1P1 chr2:97778194-97780101 - Intergenic
ENSMUSG00000082820 UCSC
Cir1P2 chr3:67650175-67650339 - Intergenic
ENSMUSG00000104477 UCSC
Cir1P3 chr5:40485780-40487258 + Intergenic
ENSMUSG00000082938 UCSC
Cir1P4 chr8:5167280-5169156 + Intergenic
ENSMUSG00000109181 UCSC

Expression

Transcript Sequences

>NM_025854.3
GGAAGTTCTCGCCCAAACTTGCCTAGCAGTTCCGGTGAAGCTCCGGGAGTTTGTTTACGTTCCGAGAAGACCTAGCGGTTGGCTTCTCCGACTCAGACGCCAAGATGGGGAAGTCATTCGCCAATTTCATGTGTAAGAAGGACTTCCATCCTGCGTCCAAATCCAACATCAAGAAGGTATGGATGGCAGAACAGAAAATATCGTatgataaaaagaaacaagaagaattaatGCAACAGTACCTTAAAGAGCAGGAGTCGTATGATAACAGATTGCTTATGGGAGATGAACGTGTGAAGAATGGCCTGAATTTCATGTACGAGGCCCCACCAGGAGTTAAGAAAGaaaacaaagagAAAGAAGAAACGGAAGGAGAGACCGAGTACAAGTTTGAATGGCAGAAAGGCGCTCCGAGAGAAAAATATGCCAAAGATGACATGAACATCAGAgatcagccctttggtattcagGTTCGAAATGTAAGGTGTATTAAATGTCACAAGTGGGGCCATGTGAACACAGATCGAGAGTGTCCCTTGTTTGGTCTTTCTGGGATCAATGCAAGTTCAGTTCCTACTGATGGCTCAGGGCCGTCGATGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATGTACTGGGGAGAAACTTGACCGCAAATGATCCATCACAGGACTATGTCGCAAGTGACTGTGAAGAAGACCCTGAAGTTGAGTTCTTAAAGTCGCTCACCaccaagcagaagcagaagctccTCAGGAAATTGGATagacttgaaaagaaaaaaaagaaaaagaaaagtgataagaaaaagaagaagttaCAGAAGAgcaaaaataaacacaagaaaCGTAAAAACaaatccccttcctcttcctcctcttcctcctcttcctcctcttcctcctcctcctcctcctcttcctcttcctcctcctcggaGACATCAGATAGCAGCAGTGAGAGtgataacaaagaaaagaaaagagagaaagagaagaggaagaagaagaagaaaaccaaatgttCTGAAAGTAAATCCAGTGACTGTAAGGAGGACAAGCCTAAGAACATGCTTTACGAAGAACTTTCCAGCAGTCACAGTGACAGGGGAAAAGCCCAGGAAAAATTAAGGTTTCCAAAACAAGAGAGTTCTGGGGAGAATAGCATGTGGGTCCATTCTGCTTCTGACCGGACATCCAGAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATCGGGGAATCCGAAGTCGGAGCCGTAGCCGGGCTGAGAGCAGCCGGcgaagcagaagcaggagtccTTACCGTCAGAAGCACAGGGAGGTGAGGAGCCGGCCACACCGGAGCCCTAGTGAAgagcagaagggaagaaagggcacCAGAAGCCATGGTGAAGGTGACCATAGAAGAGAGCACGTGCGCTGAGCGCCCAGGAGATAAAGGGAGAGGCAGCAGGCTCAACAGAGCTTCGGAGCAACCACCTGGGCATCAAGGACATCTTTAGCAAGGGCTAACATACACATtgttatctaataaaaaaagtcaaTTCATTTTCCATCTCTGTAAACTGTTGTTTCAAGTATTAAAGCACTGTTGTACCACAAGCTTAAGTTTGCAGATATTTGCAGGGAATTTAGGGTATAcaagtagtttttgttttgttgttgttgtggtggtggtgatggtggtggtagtggtggttttCTTGTTGGTAGTTGTTTCTTCTGCCTTATACCAGATTTAAAATATGTACGTAAttgtgtgattttgttgttgttttgaaacaccATTAAAACAGTGACAGAATCTTGAATAATTATCAATTCAAATTTGTTATTTTaagatttgaatatgcttgaagcAAAATGTAATCATTGTTGAAACTGACTAGGGTGAATAAAATACTGGATATC