Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl11
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L11
Also known as 2010203J19Rik
Coordinate chr4:135776665-135780704
Strand -
Gene summary Predicted to enable several functions, including peroxisome proliferator activated receptor binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process; positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and protein localization to nucleus. Located in cytoplasm and nucleolus. Is expressed in cerebral cortex. Used to study Diamond-Blackfan anemia 7. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl11

Retroname Coord Strand Genomic Region ENSG
Rpl11P8 chr12:16205451-16205591 + Intergenic
ENSMUSG00000113142 UCSC
Rpl11P9 chr14:48933020-48933438 - Intergenic
ENSMUSG00000115194 UCSC
Rpl11P10 chr16:55760701-55761098 - Intergenic
ENSMUSG00000116653 UCSC
Rpl11P11 chr17:46750460-46750952 - Intergenic
ENSMUSG00000091742 UCSC
Rpl11P12 chr18:15965830-15966427 + Intergenic
ENSMUSG00000058064 UCSC
Rpl11P1 chr3:146544529-146545120 - Intergenic
ENSMUSG00000070343 UCSC
Rpl11P2 chr4:123151824-123152735 + Intergenic
ENSMUSG00000083720 UCSC
Rpl11P3 chr5:24214845-24215428 - Intragenic
ENSMUSG00000105866 UCSC
Rpl11P4 chr6:141083754-141084334 + Intergenic
ENSMUSG00000107462 UCSC
Rpl11P5 chr7:122609369-122609883 + Intergenic
ENSMUSG00000108396 UCSC
Rpl11P6 chr9:59052918-59053500 - Intragenic
ENSMUSG00000066592 UCSC
Rpl11P7 chr11:85875384-85875606 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_025919.3
ACGGGGCCGgaagtctccctctctcttcctgttctccACCATGGCGcaagatcaaggggaaaaggagaacccCATGCGGGAACTGCGCATCCGCAAGCTCTGCCTCAATATCTGCGTCGGGGAGAGCGGAGACAGACTGACCCGGGCAGCCAAGGTGTTGGAGCAGCTCACAGGCCAGACCCCGGTGTTCTCCAAAGCTAGATACACTGTCAGGTCCTTTGGCATCCGGAGAAATGAGAAGATTGCTGTTCACTGCACAGTCCGCGGAGCCAAGGCAGAGGAAATTCTGGAGAAAGGCCTGAAGGTGCGGGAGTATGAGTTGCGGAAAAATAACTTCTCGGATACTGGAAACTTTGGTTTtggaattcaagaacacattgaCCTGGGCATCAAATACGACCCAAGCATTGGGATCTACGGCCTGGACTTCTATGTGGTGCTGGGTAGGCCAGGGTTCAGCATCGCAGACAAGAAGCGCAGAACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAGGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTACGATGGAATCATCCTTCCTGGAAAATAAACTTGATCCAAAAAGCTAATAAAATTTTCTCAGAAATGCATGTTACAGTTGTGTGTTTGTGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGCAGAGGTCCTTTAAGTGGGTTTTGAGAGGTATTGGGTTGGTTAGGGTTTGGATTTGGTTGTAATTAAGGGCTGGGACAATGTCCCAGTCCCAGCAGGTGTCCCTTGTTTGTGACTTGGTGTGTGGTGAAGGGACCACAGCTTCTGGTGTGGTGGTAAAGACTATTTTGGCTTTGTTCATAGTTGAGTTGCATTTAAAATGACACAGTTGGGAGGGAGGCCTTGTTAGGAAGGAAGTCTCACAGGCAAATTGTCGGATTAGTCCTCCCTTGATTAGCTATGGTAACCTGGAGCAGATCTGTCTCTTTCACGGAAGCAATCATCAGACAACTACTAGGCGTGTGagcacttgaatttttttttgtgtgttttgttcgtGGAATCCTAACACATTAAAACTTGGCTTGTTTTGGTGTGAA