RCPedia: Genes

Summary

Gene Name	Ccdc47	Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Mus musculus
Full Name	coiled-coil domain containing 47
Also known as	2610204L23Rik\|asp4\|calumin
Coordinate	chr11:106090086-106107349
Strand	-
Gene summary	Enables calcium ion binding activity. Acts upstream of or within several processes, including ER overload response; calcium ion homeostasis; and ubiquitin-dependent ERAD pathway. Located in rough endoplasmic reticulum. Is expressed in several structures, including alimentary system; cerebellum external granule cell layer; liver; neural retina; and yolk sac. Orthologous to human CCDC47 (coiled-coil domain containing 47). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ccdc47

Retroname	Coord	Strand	Genomic Region	ENSG
Ccdc47P1	chr11:30521231-30524727	-	Intragenic	ENSMUSG00000081887	UCSC

Expression

Transcript Sequences

>NM_026009.2
gcgCGCAGGCGCAAACTAGCTGTACGCATTCTACGTAACGGACGGCTGAAGCTACGTGAAGAGTAGGGTGCCGTGACTGAGCTACCTGTTCTGGGCTGTTCAGTGACATCGCGGCCCGCAGATTATCTTTGCGACCTGAAGACAGAAACCAGACAAAGGCAGGCTGGTTGGAGGTAGTGGCCTCAGGAGCCCCGGGCCCGGTTGCAGCCTCGGGTGCAGCTTGTTTTTAAGGTGCAATGAAAGCCTTCTATGCTTTCTGTGTGGTCCTCTTGGTGTTTGGGAGTGTCTCGGAAGCCAAGTTTGATGATTTCGAAGATGAGGAAGACATAGTAGAGTATGATGATAATGATTTTGCTGAGTTTGAGGACGTCATGGAAGATTCTGTTACGGAGTCGCCTCAGCGAGTGATCAGCACTGAAGATGACGAGGACGAGGCCACCGTGGAGTTGGAAGGGCAGGATGAAAGCCAAGAAGGTGATTTCGAAGATGCAGATACCCAGgagGGAGATACAGAAAGTGAGCCATATGATGATGAGGAATTTGAGGGTTATGAAGACAAACCAGATACCTCTTCTAACAAAAATAAAGATCCAATAACAATTGTTGATGTTCCTGCACACCTCCAGAACAGTTGGGAGAGTTATTACCTAGAAATTTTGATGGTGACTGGTCTGCTTGCCTATATCATGAACTACATCATTGGGAAGAATAAAAACAGCCGACTTGCTCAGGCCTGGTTTAACTCTCATAGAGAGCTTTTGGAGAGCAATTTTACATTAGTGGGGGATGATGGGACTAACAAAGAAGCCACAAGCACAGGGAAGTTGAATCAGGAGAATGAGCACATCTATAACCTGTGGTGTTCTGGCCGAGTGTGCTGTGAAGGCATGCTTATCCAGCTGAGGTTCCTTAAGAGACAAGACTTACTTAATGTCCTGGCCCGGATGATGAGGCCAGTGAGTGATCAAGTGcaaataAAAGTAACAATGAATGACGAGGACATGGACACATACGTGTTTGCTGTCGGCACTCGCAAAGCTTTGCTGCGACTACAGAAAGAGATGCAGGATCTGAGTGAGTTTTGCAGTGATAAACCAAAGTCTGGAGCAAAGTATGGACTGCCAGACTCTTTGGCCATTCTGTCAGAAATGGGAGAAGTCACAGAGGGAATGATGGATACAAAGatggttCATTTTCTTACACACTATGCTGATAAGATTGAATCTGTTCATTTTTCAGACCAGTTCTCTGGTCCAAAGATTATGCAAGAGGAAGGCCAGCCTTTAAAGCTGCCTGACACCAAGAGGACGCTACTGTTTACATTTAATGTGCCTGGCTCAGGTAACACATACCCAAAGGATATGGAGTCTTTGCTACCCCTGATGAACATGGTGATTTATTCTATCGATAAAGCCAAAAAGTTCCGACTCAACAGAGAAgggaaacaaaaagcAGATAAGAACCGGGCTCGTGTGGAAGAGAACTTTCTGAAGCTGACACAtgtgcagagacaggaggctgcACAGTCTCGGCgtgaggagaaaaaaagagctgAGAAGGAGCGGATCATGAACGAGGAGGACCCTGAGAAACAGCGCAGGCTGGAAGAAGCTGCTTTGAGGAGAGAACAAAAGAAGTTGGAGAAGaagcaaatgaaaatgaaacaaatcaaAGTGAAAGCCATGTAGAGCTGGTTGCAGAGGTTGTGTCCTTGCTGCCGTTAGCTCTCCGTCCACCGGAGACAGGAAAAGCAGGAGTCTGCACCTAACAGTCACGAGTCTCTGCTGACTGAGAGATCTTTATCTCACCCTCTCCTCTCGGTTTAGAGTTCTACAGAGGTTATAGATACAATGAAAGGGCTCTTTCAGTTATTTCCTTCCAGATAATcaaattattttgattattttataaaaGGAGCGGTATATAAAGTAtgtgtagttttaaaatatatttaaattataatgtGAATCATCAGTGCGTTACTTTGGTGTTTGAAGACCGATCATGAAATTTCTAGGTAGATTGTTGCTCTTTGTTTAAACTGGACAGTTGAAATAACTATGGAGACTGACTCTAAACCAAGACCCTAATATCTATTGGAATTGCACAATAAACATTGCTTGTTTTTTCTGTGTCCACATTAAACTTGTGAAAAAAGTGGAACGTAGAACACTATGTGGTGATAAATTCAGAGACTTAGAGCATAGTACAGCGTATGGTTTGTGTGTGGGTGGTGCTATGGCAGTATTATAGGAGGGAATCTGTCGGTATTAGGATACTGTAAGTCAGTGGAAGATTCTAGATGTAGGTAGTACAGGAGCAGTTTCTCATTGCCTGATACTATGAGCTAATGACACTGTGAGTGCTGGATTTGAAGTAGTTATGTGCTTATTTTTCTTGAGCAAGAATGCATGACAAGGTGAAGTGCTTCACCTAGCTCCCTCCGCTCAGCAGCAGTCAGGTGGCTGGGCTCTGTGAGGTCACagtggtttgcttgcttgctgcaGCCTGGTAGGTGTTCATGGAGGAGCTGATCTCTGTCTTAGGCGTGCACTTTGCTTCCACGCCTGCTTTTATATCGTCCACAAGGCCGGTTTGTACTTTCTTGAAACAAATAACCAATCGATatacacaaatatgcttttaaaaagtgagctttttttaaatgaatcagAATTTTGTCTGACTCATGAGGCGGAAGCGATGGTAGGGAGAGGTTCCTCTCTGTGCATAAGCATTTGGCTTGTTGAGATCTCTGCATTTTATAAATGCTTcctactgagaaagcatttcttAAGTCTTTGCTTGTACCAGGTCATTTTTGCTGGGGTGGGAAAGGGTGGTTTTTGCTTTGGGAGCGGGTAGTGGGGTTTTGTTGATGCTTTCTGTGTTCTGATGCAGTAACAGTGAGTTGCGGTGAAAACTGTGTGTGCTGTTGCCTTGGGAATTGTATGGAGTTTTTCACATGGCTTTGTGTAGGCTAATAGAAATATATGCACTGGGATATTCAAGTGTAATGTTTTTTAACAGTTCACAAGtttaagttattaaaaataacacaaaattaaATCACTTTAAGGCCAGATAATTTTAGACTTAACATTGTtttacaaatctttaaaatacatttagaatCAAAATTTATGTGTTTAGTTATCGTTTAAGTAATATAAGCTTTCTTAAAGTCCCATACATCAGACCGTGGCAGCTAATTTTGTAACAAGCATTCATATGAACTACCTATGACATATATTAAACTGATTGACAAAA