Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Prpf18
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name pre-mRNA processing factor 18
Also known as 2810441A10Rik
Coordinate chr2:4626869-4656946
Strand -
Gene summary Predicted to be involved in generation of catalytic spliceosome for second transesterification step; negative regulation of cellular protein metabolic process; and nuclear retention of unspliced pre-mRNA at the site of transcription. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Is expressed in several structures, including adipose tissue; alimentary system; central nervous system; genitourinary system; and sensory organ. Orthologous to human PRPF18 (pre-mRNA processing factor 18). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Prpf18

Retroname Coord Strand Genomic Region ENSG
Prpf18P1 chr6:50576872-50577215 + Intergenic
 ENSMUSG00000107447 UCSC
Prpf18P2 chr18:17367542-17368582 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001356451.1
GATTTCCGCCGGAAGCGGCTCCGGCAGTTGTTGTTTTCCGATAATTGGGCTCTGGTTGCTTCGTGGTttgtcctcttccccctcccctggcGGGTGAGGTTACCGCCGAGGAGCTGGGGAGTCAAAGTGAAGACACTTAGACCCTGGGAGCGAGATGGACATCCTGAAATCCGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGgaaaataaaaaatacttcaaGCGGAGTGAACTGgcgagaaaagaagaggaagcgTATTACGAAAGATGTGGCTACAAGCCTGTAAGTGAGAAGCCTTCTGGAGAGATACAGCCAAAAGAGGATGACCAGAAACCACTAACATCGTCAAATCCAGTGCTGGAACTTGAACTAGCAGAGGAAAAACTTCCTATGACTCTTTCTAGGCAAGAGGTCATCagaagactgagagaaagaggagagccgATTAGACTGTTTGGGGAAACCGACTATGATGCTTTCCAGCGTTTAAGGAAGATAGAGATTCTTACACCAGAAGTTAACAAGGGCTTAAGGAATGATCTGAAAGCAGCTTTGGACAAGATTGACCAGCAGTACTTGAATGAGATTGTGGGTGGTCAGGAACCTGGAGAGGAGGACACCCAGAATGACCTGAAAGTTCACGAGGAAAACACCACCATTGAAGAATTAGAGGCACTGGGGGAGTCCTTAGGGAAAGGTGACGATCATAAGGACATGGACATCATCACCAAGTTCCTGAAGtTTCTTCTTGGTGTTTGGGCTAAAGAACTGAATGCCAGAGAGGACTACGTGAAACGCAGTGTGCAGGGCAAACTGAACAGTGCTACCCAGAAGCAGACGGAGTCCTACCTCAGACCGCTTTTCAGAAAGCTCCGGAAAAGGaatCTTCCTGCTGATATTAAAGAATCAATAACAGATATTATTAAGTTCATGTTGCAGAGAGAGTACGTGAAGGCGAATGATGCTTACCTTCAGATGGCCATTGGCAATGCCCCCTGGCCTATCGGTGTCACCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTTCCAAGCATGTTGCGCATGTTTTAAATGATGAAACCCAACGGAAATACATTCAGGGACTGAAGAGGTTAATGACAATTTGCCAGAAGCACTTTCCTACAGATCCGTCAAAATGTGTGGAGTATAATGCACTATGAGATctgcacacagtgtgtgtgtcagGAAGCCTCCGCTCGCTCGATCCCTCGCAGCATGAGGACTCCGGCCTTACCACAGCTACGAGGGAAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGTTGGCTTTCACATGGAACTGGACTGCAAACTAATTTTTGTGTCTtgatttcattttaatgagtTGAAAAATTAAGTTGTAAAGATATTATCCGTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGTTGATACTTAGGAACATTTGAAGGTGGCTTTGAACTTTCTGTAAATTATTGTGATTTGCACATTTTTCTATGTGgtatttatagaaaatattttttatatttcagcAAAAGTATGGGTCATTGAATGCTCCTTTAGAGTTTTCTGTGGTCTTGGACCTTCTGCCATCTTGTAATAGAGTGTGTGGAATGTTGCTGTTAAGTGTTATTTGTCTTGTGTTTCAgacttgcttttctttctaagcAGAGTATGGTTGTCATCTTTCTGGACAGATGAATTGATAGGAGATAGAAGGTCGAAAGATGGCTGTTATACCAGCCTAAGTTCAGAACACCAGCATATCAAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTGGTCCTCACTCGCCTCACAACATGACTTGCTCTAGGGCTTACAGAATGGAGCTTTGGTCACCGTGACCACTCTGTGCTGCAATGCTGAGAGGTCTGGACTAGTTCACTGATGTGTGCAGATGGGTTGGGTGTGGtgtcagagaaggaagagggagtgggccAAACCAGGACTGACAGCTTCTCAAGGACATGCTCGATCTAACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGagctttggcttctttgtctGACATTGATGCTAAGAGTCCATACCTCACATCGATATTGTGTAAGATGCTGAGTCTGCTGCCTGGCAGATGATAAGAGATCATTATTATTGCTTATTACAGTGTAGACCCAGGGCCTTTACGGGGCCCTGTGGCTACCCTGGGATAGTATGTACtcatgtaacaacaacaacaacaactgagtTAGCAGCAATAGTAAGTGAAGGAGTCATTATTAGGTTTCtctaccccccgccccccatctttACTTTCAGTCAGGTCCAAGTTTAGGAGTGCAGAGAACAGGACCTGGGGGCTGCTGTAGGTGGCTCAGATTCACAGTTGCTTATGCTGGCCCCTCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTGGTGGCTGTCTTGGGTTGAATCAGTGTTCCCTTGCACTCCAGCTGAAGCCTTTTCCTAAGATGAAAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCTCATAAGATGTGCAGCAAATCCCTACTGTGACATGTGGTTTGGTCATAAAAGTCTTCTTTATAAATACTATCAGAAATGCCCAAATCACTCATTCTTCATCCACTGTTAGGCCACACAGCATGGTAAGTCATTTTATGTTGTCTTCTCTTGTTAATATTCCAcataaaggggctggagaaatggctcagcgggtaagagcactgactcttcttcctgaggtcctgagttcaatacccagcaatcacatggtggctcataaccatctgtaatggaatctgatgccctcttctggtgtgtctgaagacagctacaatgtactcatatacataaaaaaataaataaaatctttttttaaaaattccacatAAAGAAGAAACTATATCATATGACATCAGTACTTCCTAAAATTGATCTGTGTgggctggggttttgttttgttatttgtttgtttgtctgtttgttttttgagcttGCTTTGTCTGCAGGGGAATTCGTATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGTCAAGTTTTTCATAACCGAAATTAAAAAGCTATGTACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTTCTTTCATTAAATGGAAATTTTACTTTTGCCTATactatatatttttgtttcaagattgtttttaaaacaacaaagatTTCTTTTAAACAAGTTACAACTCTATTGACTGTGTCCgtttctctcctccccatccttccATCACAAGAACTGGGATTCTCTGTATTCACATTTAGTAAAAAACCCTTTCCTTAGAAATCAA
>NM_026045.4
GATTTCCGCCGGAAGCGGCTCCGGCAGTTGTTGTTTTCCGATAATTGGGCTCTGGTTGCTTCGTGGTttgtcctcttccccctcccctggcGGGTGAGGTTACCGCCGAGGAGCTGGGGAGTCAAAGTGAAGACACTTAGACCCTGGGAGCGAGATGGACATCCTGAAATCCGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGgaaaataaaaaatacttcaaGCGGAGTGAACTGgcgagaaaagaagaggaagcgTATTACGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGATGACCAGAAACCACTAACATCGTCAAATCCAGTGCTGGAACTTGAACTAGCAGAGGAAAAACTTCCTATGACTCTTTCTAGGCAAGAGGTCATCagaagactgagagaaagaggagagccgATTAGACTGTTTGGGGAAACCGACTATGATGCTTTCCAGCGTTTAAGGAAGATAGAGATTCTTACACCAGAAGTTAACAAGGGCTTAAGGAATGATCTGAAAGCAGCTTTGGACAAGATTGACCAGCAGTACTTGAATGAGATTGTGGGTGGTCAGGAACCTGGAGAGGAGGACACCCAGAATGACCTGAAAGTTCACGAGGAAAACACCACCATTGAAGAATTAGAGGCACTGGGGGAGTCCTTAGGGAAAGGTGACGATCATAAGGACATGGACATCATCACCAAGTTCCTGAAGtTTCTTCTTGGTGTTTGGGCTAAAGAACTGAATGCCAGAGAGGACTACGTGAAACGCAGTGTGCAGGGCAAACTGAACAGTGCTACCCAGAAGCAGACGGAGTCCTACCTCAGACCGCTTTTCAGAAAGCTCCGGAAAAGGaatCTTCCTGCTGATATTAAAGAATCAATAACAGATATTATTAAGTTCATGTTGCAGAGAGAGTACGTGAAGGCGAATGATGCTTACCTTCAGATGGCCATTGGCAATGCCCCCTGGCCTATCGGTGTCACCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTTCCAAGCATGTTGCGCATGTTTTAAATGATGAAACCCAACGGAAATACATTCAGGGACTGAAGAGGTTAATGACAATTTGCCAGAAGCACTTTCCTACAGATCCGTCAAAATGTGTGGAGTATAATGCACTATGAGATctgcacacagtgtgtgtgtcagGAAGCCTCCGCTCGCTCGATCCCTCGCAGCATGAGGACTCCGGCCTTACCACAGCTACGAGGGAAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGTTGGCTTTCACATGGAACTGGACTGCAAACTAATTTTTGTGTCTtgatttcattttaatgagtTGAAAAATTAAGTTGTAAAGATATTATCCGTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGTTGATACTTAGGAACATTTGAAGGTGGCTTTGAACTTTCTGTAAATTATTGTGATTTGCACATTTTTCTATGTGgtatttatagaaaatattttttatatttcagcAAAAGTATGGGTCATTGAATGCTCCTTTAGAGTTTTCTGTGGTCTTGGACCTTCTGCCATCTTGTAATAGAGTGTGTGGAATGTTGCTGTTAAGTGTTATTTGTCTTGTGTTTCAgacttgcttttctttctaagcAGAGTATGGTTGTCATCTTTCTGGACAGATGAATTGATAGGAGATAGAAGGTCGAAAGATGGCTGTTATACCAGCCTAAGTTCAGAACACCAGCATATCAAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTGGTCCTCACTCGCCTCACAACATGACTTGCTCTAGGGCTTACAGAATGGAGCTTTGGTCACCGTGACCACTCTGTGCTGCAATGCTGAGAGGTCTGGACTAGTTCACTGATGTGTGCAGATGGGTTGGGTGTGGtgtcagagaaggaagagggagtgggccAAACCAGGACTGACAGCTTCTCAAGGACATGCTCGATCTAACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGagctttggcttctttgtctGACATTGATGCTAAGAGTCCATACCTCACATCGATATTGTGTAAGATGCTGAGTCTGCTGCCTGGCAGATGATAAGAGATCATTATTATTGCTTATTACAGTGTAGACCCAGGGCCTTTACGGGGCCCTGTGGCTACCCTGGGATAGTATGTACtcatgtaacaacaacaacaacaactgagtTAGCAGCAATAGTAAGTGAAGGAGTCATTATTAGGTTTCtctaccccccgccccccatctttACTTTCAGTCAGGTCCAAGTTTAGGAGTGCAGAGAACAGGACCTGGGGGCTGCTGTAGGTGGCTCAGATTCACAGTTGCTTATGCTGGCCCCTCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTGGTGGCTGTCTTGGGTTGAATCAGTGTTCCCTTGCACTCCAGCTGAAGCCTTTTCCTAAGATGAAAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCTCATAAGATGTGCAGCAAATCCCTACTGTGACATGTGGTTTGGTCATAAAAGTCTTCTTTATAAATACTATCAGAAATGCCCAAATCACTCATTCTTCATCCACTGTTAGGCCACACAGCATGGTAAGTCATTTTATGTTGTCTTCTCTTGTTAATATTCCAcataaaggggctggagaaatggctcagcgggtaagagcactgactcttcttcctgaggtcctgagttcaatacccagcaatcacatggtggctcataaccatctgtaatggaatctgatgccctcttctggtgtgtctgaagacagctacaatgtactcatatacataaaaaaataaataaaatctttttttaaaaattccacatAAAGAAGAAACTATATCATATGACATCAGTACTTCCTAAAATTGATCTGTGTgggctggggttttgttttgttatttgtttgtttgtctgtttgttttttgagcttGCTTTGTCTGCAGGGGAATTCGTATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGTCAAGTTTTTCATAACCGAAATTAAAAAGCTATGTACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTTCTTTCATTAAATGGAAATTTTACTTTTGCCTATactatatatttttgtttcaagattgtttttaaaacaacaaagatTTCTTTTAAACAAGTTACAACTCTATTGACTGTGTCCgtttctctcctccccatccttccATCACAAGAACTGGGATTCTCTGTATTCACATTTAGTAAAAAACCCTTTCCTTAGAAATCAA