Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl39
Plot displaying the genomic locations of a parental gene (in chrX) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L39
Also known as 2810465O16Rik
Coordinate chrX:36346171-36348875
Strand -
Gene summary Predicted to be a structural constituent of ribosome. Predicted to be involved in antimicrobial humoral immune response mediated by antimicrobial peptide; cytoplasmic translation; and defense response to other organism. Predicted to be located in cytosolic ribosome; extracellular space; and polysomal ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL39 (ribosomal protein L39). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl39

Retroname Coord Strand Genomic Region ENSG
Rpl39P20 chr10:70174073-70174381 + Intergenic
ENSMUSG00000112676 UCSC
Rpl39P22 chr11:17045348-17045702 - Intergenic
ENSMUSG00000082099 UCSC
Rpl39P21 chr11:115383798-115384159 + Intergenic
ENSMUSG00000081376 UCSC
Rpl39P26 chr13:9190618-9190925 - Intragenic
ENSMUSG00000099428 UCSC
Rpl39P25 chr13:23566619-23566967 + Intergenic
ENSMUSG00000083667 UCSC
Rpl39P27 chr14:120314904-120315224 + Intergenic
ENSMUSG00000115133 UCSC
Rpl39P29 chr15:83142065-83142298 - Intergenic
ENSMUSG00000116416 UCSC
Rpl39P28 chr15:102543416-102543775 + Intergenic
ENSMUSG00000036305 UCSC
Rpl39P30 chr16:42005134-42005300 - Intergenic
ENSMUSG00000116841 UCSC
Rpl39P33 chr17:66931737-66932037 - Intergenic
ENSMUSG00000117186 UCSC
Rpl39P34 chr17:78766055-78766376 + Intergenic
ENSMUSG00000117180 UCSC
Rpl39P2 chr2:105845527-105845848 + Intergenic
ENSMUSG00000083425 UCSC
Rpl39P3 chr2:111529044-111529224 - Intergenic
ENSMUSG00000082091 UCSC
Rpl39P7 chr3:53253833-53254027 - Intergenic
ENSMUSG00000106660 UCSC
Rpl39P8 chr3:88191768-88192061 - Intragenic
ENSMUSG00000103574 UCSC
Rpl39P9 chr3:90558958-90559259 - Intragenic
ENSMUSG00000105644 UCSC
Rpl39P12 chr5:37454889-37455176 - Intergenic
ENSMUSG00000107307 UCSC
Rpl39P13 chr7:127612054-127612413 - Intragenic
ENSMUSG00000108437 UCSC
Rpl39P14 chr8:78834578-78834781 + Intergenic
ENSMUSG00000109948 UCSC
Rpl39P16 chr8:84476068-84476430 + Intergenic
ENSMUSG00000110570 UCSC
Rpl39P17 chr9:77935209-77935520 + Intergenic
ENSMUSG00000111850 UCSC
Rpl39P18 chr9:92421891-92422155 - Intragenic
ENSMUSG00000099610 UCSC
Rpl39P38 chrX:36102643-36103004 - Intragenic
Intragenic
ENSMUSG00000084265 UCSC
Rpl39P36 chrX:143050892-143051252 - Intergenic
ENSMUSG00000081897 UCSC
Rpl39P37 chrX:150275961-150276282 - Intergenic
ENSMUSG00000082423 UCSC
Rpl39P1 chr1:84780597-84780832 + Intragenic
Intragenic
N/A UCSC
Rpl39P4 chr2:123758150-123758376 - Intergenic
N/A UCSC
Rpl39P5 chr2:152644382-152644744 + Intragenic
N/A UCSC
Rpl39P6 chr2:64476135-64476431 - Intergenic
N/A UCSC
Rpl39P10 chr5:100857182-100857409 + Intragenic
N/A UCSC
Rpl39P11 chr5:26417679-26417909 - Intragenic
N/A UCSC
Rpl39P15 chr8:83622817-83622994 + Intragenic
N/A UCSC
Rpl39P19 chr10:21553962-21554288 + Intergenic
N/A UCSC
Rpl39P23 chr12:84043481-84043687 - Intergenic
N/A UCSC
Rpl39P24 chr13:113885701-113885957 + Intergenic
N/A UCSC
Rpl39P31 chr16:9992171-9992332 + Intragenic
N/A UCSC
Rpl39P32 chr17:24201225-24201446 - Intragenic
N/A UCSC
Rpl39P35 chr19:32449614-32449776 - Intergenic
N/A UCSC
Rpl39P39 chrX:56006108-56006460 - Intragenic
N/A UCSC
Rpl39P40 chrX:78144598-78144801 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_026055.2
TAGCGACTTCTTCTAATCGCGTTCTTCCGGTCCCGGCCTTTCTCTTCTCCATTCCTCCGCCATCGTGCGCGCTATTCTTGATTCGGCTTCTCGCCATGTCTTCTCACAAGACTTTCCGAATCAAGCGATTCCTggccaagaaacaaaagcaaaatcgcCCTATTCCTCAGTGGATCCGGATGAAAACTGGTAACAAAATCAGGTACAACTCTAAGAGAAGACACTGGAGGAGAACGAAGCTGGGTCTGTAAGGATTCACACAATGGCAAGACTGAGGATTTATACTGAATTGTCATCAATCAGTCCTACCAGATGGATTTCAACATTTAAACCTGGAGACTCTTCGTGTCTTGAATTAGGATGTTTGTCCAGTAATAAAATATAGAACCTTTCAAAATGCTTTTCTGGTTTATAAAGTACTGAATTGCCCTTAT