Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Map1lc3b
Plot displaying the genomic locations of a parental gene (in chr8) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name microtubule-associated protein 1 light chain 3 beta
Also known as 1010001C15Rik|Atg8|LC3b|MAP1A/MAP1B|Map1lc3
Coordinate chr8:122317177-122325499
Strand +
Gene summary Predicted to enable several functions, including ceramide binding activity; microtubule binding activity; and ubiquitin protein ligase binding activity. Involved in autophagy. Acts upstream of or within positive regulation of mucus secretion. Located in autolysosome; axoneme; and membrane. Is expressed in several structures, including central nervous system; heart; limb; peripheral nervous system ganglion; and sensory organ. Orthologous to several human genes including MAP1LC3B (microtubule associated protein 1 light chain 3 beta). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Map1lc3b

Retroname Coord Strand Genomic Region ENSG
Map1lc3bP5 chr11:3575234-3575900 - Intergenic
 ENSMUSG00000084211 UCSC
Map1lc3bP7 chr14:48316589-48317268 - Intergenic
 ENSMUSG00000062081 UCSC
Map1lc3bP1 chr4:105956118-105956720 + Intergenic
 ENSMUSG00000082768 UCSC
Map1lc3bP2 chr5:147345710-147346413 + Intergenic
 ENSMUSG00000057157 UCSC
Map1lc3bP4 chr9:18338756-18340314 + Intergenic
 ENSMUSG00000074501 UCSC
Map1lc3bP3 chr8:96033757-96034360 - Intergenic
 N/A UCSC
Map1lc3bP6 chr12:14879488-14880124 + Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_026160.5
CACCTGACTCGGCTGCGGACTGAGACACACACAAGGGAAGTGATCGTCGCCGGAGTCAGATCGTCTGGCTCGGGACCCCCGCGCGCCATGCCGTCCGAGAAGACCTTCAAGCAGCGCCGGAGCTTTGAACAAAGAGTGGAAGATGTCCGGCTCATCCGGGAGCAGCACCCCACCAAGATCCCAGTGATTATAGAGCGATACAAGGGGGAGAAGCAGCTGCCCGTCCTGGACAAGACCAAGTTCCTGGTGCCTGACCACGTGAACATGAGCGAGCTCATCAAGATAATCAGACGGCGCTTGCAGCTCAATGCTAACCAAGCCTTCTTCCTCCTGGTGAATGGGCACAGCATGGTGAGTGTGTCCACTCCCATCTCCGAAGTGTACGAgagtgagagagatgaagacggCTTCCTGTACATGGTTTATGCCTCGCAGGAGACATTCGGGACAGCAATGGCTGTGTAAGACTCCAACAAAGCCAATGGTTGTTAAGCCCTTACCAAGGCAAAAAGGGATGTTACCAGCGGACGCTGGACGGCTCACCACCCACAGATGAGAACGTAGGCACCCACATAGGGTATTAGGAACTGTTCATCAGCCAGAAACTGAGCTCCATGCAAGTGCACTCAGCTTGGAAACTCGTCTAAACTAGGCTATTTTGTGTTCAAACTttagaagttaaaaataaaatactttttgcaTCCTAAGTTGCCAATAAAAAGATCAAgttattttgacatttttctcCCTAGTAGGGACTTAAAACAGAAGAGCAGTGTCAGGGGCAGTCTCTTCCTGGGACCTGCTGCCTTCTCTAAAAGGGCTCCCACTCAGCAGAGAAGCCCCTCTGAAGGCCCAGGTTGCCTAGCAGAGGCCCCCAGAGGGCCCTGGCTTTGCCCTAAGCAGGTCTGGTGTTGTAGGATATAGCTCTAAGCCGGGTCCTGGTCTTGACCCCAGCCACACCCTTTCACTCAGCAGTGCAGGGACATGCAGCTCGCTGCTGTCTAGATGTTACCATACGCCCTTCTGCTGAGGCCAGGTCTCCGCTTGTCCAGGGGTTGCTGACCCAGCTTAAGCGACTGGAGAGCTGTTTCTCTCCTGGTTTGAATTCTGTCTGGTCCATGCCTGCTTCAGGGAGAGCAAGCGCTGGCCTTAGGATGTGGTTGTCAAGTGGTAGACTGCAAGTCCAATGCTCCAGACTTGGCTCACAGCTCTTTGTTGGTGTGTAACTGTCTCTGTAAGGGTGGTTCTGACAGCTGTTGGGATTTCCCCATTTCATGTCAGTACATACATGTCAGCTGTGAGGACAACAGCAACAGAAGACATGCTTTTGATAGACATGCCACTTCAGCTAAAGctagcctctgcttcctgcatgTGGCCCGCTGTGACACCAGGCCATCCCTGGTCACTCACTCACTCGTGGTCTGAGGATCTCAGAGCTGCCTGCTGTCATGGACTGAAGCCAGCATAGCCACCTCCCACCTAGCTCCCCACAGGCACCCACCTTCCCTGCATGCAGCTGTCTTTGCTAACCCTCAATGTTATTTTACACTGTAAATTCTCACTGCTCTGTCTTGTGTAGGTTGTATACGTCATTATGTCCCTGGTTTTTATAACTATGGTGCGATCAGTAAGGATTCCTGTAATACTGCTTTAAAGATGCTGCTCAGAGGGCGGGCGGCCTCCATTATAGGACACCTGTACACTCTGATGCACTAATAAAGGCACAACGAACCTGTCCTGAGTGATGTCTCATTGTCATCGTGGGAACTGGGCTCTGCAGTATACCCAGGCTGCTCTtgctggggaggagaggagaggggaggggcggTAACCTCCTTTCCTTGGTCGATACCTTGCCACCAGCTCCTGCTTTTAAACTCAATCTCTGACTGACCTGCCAGCTATCAGGTGCCCTCTGGTGCCATGGGAACACACCAAAAGATTTACTCATGTGGATAGCTGCTGGCACTTGGGAGGACATTGTAACCAACTTCAGCTTAGAGCAGACGGCAGGCTCTGCAAAGCTGCTGCAGTCTCCTCGGGGCAGCCTGGACACTACTCTGGGTGGCAGGCGCCTTTGGGGTCCAGCAGTGTTGTCAGCAGGTCCTCATCCTGGAAGGGCAGGGCAAGTGATAGCCTAGAGTCCTATGTAACAATGTTTAAAGCTGAGAACCTTGACAGCCACGAATGACAAAAGATCTGAGAATGGCCCtatgtggtggcgcatgcctttagcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgatcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccgtcttaccccccgcccccccaaaaaatctGAGAATGGTGAAcatgttgagttttttttttaatttttattttccgtACATTAAATTTACTCATAAAAACAGTC