Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Lsm3
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2
Coordinate chr6:91493017-91499602
Strand +
Gene summary Predicted to enable U6 snRNA 3'-end binding activity. Predicted to be involved in P-body assembly and mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Lsm1-7-Pat1 complex; Lsm2-8 complex; and nucleus. Predicted to be active in P-body. Is expressed in brain; central nervous system ganglion; and cerebral cortex ventricular layer. Orthologous to human LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm3

Retroname Coord Strand Genomic Region ENSG
Lsm3P1 chr4:34281823-34282441 - Intergenic
N/A UCSC
Lsm3P2 chr8:78346888-78347124 - Intragenic
N/A UCSC
Lsm3P3 chr15:39269683-39270276 - Intragenic
Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_026309.2
GGAAAGGGCGCAGCGTTTGAAACATGGCGGACGACGTAGATCAGCAACAGACCACCAATACCGTAGAGGAGCCCCTGGATCTGATCAGGCTCAGCCTGGATGAGCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGACTACACGCTTATGATCAACATTTAAATATGATCCTGGGAGATGTAGAAGAAACTGTGACAACGATAGAGATTGATGAGGAGACATATGAAGAGATATATAAATCCACAAAACGAAACATCCCTATGCTCTTCGTCCGGGGAGATGGCGTCGTTCTAGTCGCCCCTCCATTGAGAGTtggctgagacaaaagatggatcCTGTGTAGGAAAGTGGAGACTTTGCCTCTTGAGATGTACAGGACACTCCCAGAGAGAGACGCTCACACGAATCCTGATAGTCAGAAATGACCCCAGGATCACTCTACCCTCGAAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTTCTCCAGCCCTCCAGTCAGTGTGACCGTCTTGCTCTTTTCAGGAGTTGGTTTGCCCATTGTTCTTGCAGTTACTTTCaggttgtttttctttaaattaaatttgatgtttccttttt