Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Rps27l
Plot displaying the genomic locations of a parental gene (in chr9) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S27-like
Also known as 1810034D23Rik
Coordinate chr9:66851906-66856804
Strand +
Gene summary Predicted to enable RNA binding activity; cysteine-type endopeptidase activator activity involved in apoptotic process; and translation activator activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in intracellular signal transduction; positive regulation of cellular protein metabolic process; and ribosomal small subunit assembly. Predicted to be located in nucleus. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including alimentary system; lung; nose; skeletal musculature; and ventricular layer. Orthologous to human RPS27L (ribosomal protein S27 like). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps27l

Retroname Coord Strand Genomic Region ENSG
Rps27lP4 chr16:68685176-68685604 + Intergenic
 ENSMUSG00000116562 UCSC
Rps27lP1 chr3:65876159-65876626 - Intergenic
 ENSMUSG00000102914 UCSC
Rps27lP2 chr5:10756723-10757161 - Intergenic
 ENSMUSG00000105295 UCSC
Rps27lP3 chr8:65544805-65545229 - Intragenic
 ENSMUSG00000109711 UCSC
Rps27lP6 chrX:75963311-75963727 - Intergenic
 ENSMUSG00000083482 UCSC
Rps27lP5 chrX:40461124-40461520 + Intergenic
 ENSMUSG00000083515 UCSC

Expression

Transcript Sequences

>NM_001311101.2
GCCTCTATCCCGGAAGTTGCTGAGGGGCGCTCGAAAGCGAGCAGTTCGTCTCGGCGACCTGGAGCGGCCGCGCTTGCGGAGCCGTCACCATGCCCCTGGCTAGAGATCTGTTACACCCTTccttggaggaggagaagaaaaaacataagaaGAAACGGCTGGTTCAGAGCCCAAATTCTTACTTCATGGATGTGAAATGTCCAGgTTGCTACAAGATTACTACAGTTTTCAGCCATGCACAGACTGTGGTTCTTTGTGTGGGTTGTTCAACTGTGTTGTGCCAGCCCACAGGAGGAAAAGCCAGGCTCACAGAagAGAGCTGTGAATTCCATGTTTTCACTGGAAGAGTTACAAGTGAATTAGCAATAATCCAAGATCAACTTGGTATTTTTAGGCTGTTCATTTAGAAGAAAGCAACACTAATGAGCTATGAAGTTCCGGAATTTGTGTTTTTCACAGAAAGCCTTACCAACTTCAGTTACTTTACCAAGACAATGTAATTATTGTTTGATTTTATAAAGTCTACAACAATGATCTCCTATTTTGGTGTCAGTTTTtcaataaagttttaattatggacaagttcct
>NM_026467.5
GCCTCTATCCCGGAAGTTGCTGAGGGGCGCTCGAAAGCGAGCAGTTCGTCTCGGCGACCTGGAGCGGCCGCGCTTGCGGAGCCGTCACCATGCCCCTGGCTAGAGATCTGTTACACCCTTccttggaggaggagaagaaaaaacataagaaGAAACGGCTGGTTCAGAGCCCAAATTCTTACTTCATGGATGTGAAATGTCCAGgTTGCTACAAGATTACTACAGTTTTCAGCCATGCACAGACTGTGGTTCTTTGTGTGGGTTGTTCAACTGTGTTGTGCCAGCCCACAGGAGGAAAAGCCAGGCTCACAGAagGCTGTTCATTTAGAAGAAAGCAACACTAATGAGCTATGAAGTTCCGGAATTTGTGTTTTTCACAGAAAGCCTTACCAACTTCAGTTACTTTACCAAGACAATGTAATTATTGTTTGATTTTATAAAGTCTACAACAATGATCTCCTATTTTGGTGTCAGTTTTtcaataaagttttaattatggacaagttcct