Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl34
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L34
Also known as 1100001I22Rik
Coordinate chr3:130520476-130524047
Strand -
Gene summary Predicted to be a structural constituent of ribosome. Located in mitochondrion. Is expressed in embryo. Orthologous to human RPL34 (ribosomal protein L34). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl34

Retroname Coord Strand Genomic Region ENSG
Rpl34P12 chr10:128026358-128026761 + Intergenic
ENSMUSG00000112553 UCSC
Rpl34P15 chr13:116290273-116290712 + Intergenic
ENSMUSG00000061669 UCSC
Rpl34P16 chr14:26235672-26236064 + Intragenic
ENSMUSG00000078128 UCSC
Rpl34P18 chr14:57622278-57622746 - Intragenic
ENSMUSG00000114952 UCSC
Rpl34P19 chr17:3180386-3180814 - Intragenic
ENSMUSG00000116941 UCSC
Rpl34P21 chr17:66720587-66721005 - Intragenic
ENSMUSG00000093686 UCSC
Rpl34P2 chr2:92063407-92063809 + Intragenic
ENSMUSG00000083951 UCSC
Rpl34P1 chr2:156734900-156735045 - Intergenic
ENSMUSG00000081616 UCSC
Rpl34P4 chr4:83423379-83423808 - Intergenic
ENSMUSG00000066116 UCSC
Rpl34P5 chr5:108664974-108665436 + Intergenic
ENSMUSG00000060730 UCSC
Rpl34P6 chr5:121668624-121668939 - Intragenic
ENSMUSG00000082265 UCSC
Rpl34P7 chr6:71101560-71101989 + Intergenic
ENSMUSG00000068396 UCSC
Rpl34P8 chr6:82929722-82930154 + Intragenic
ENSMUSG00000107701 UCSC
Rpl34P10 chr7:19202113-19202475 + Intragenic
ENSMUSG00000109301 UCSC
Rpl34P22 chrX:101251975-101252401 + Intergenic
ENSMUSG00000081263 UCSC
Rpl34P24 chrX:133582224-133582663 + Intergenic
ENSMUSG00000082655 UCSC
Rpl34P11 chr9:113833857-113834278 - Intragenic
N/A UCSC
Rpl34P20 chr17:32461203-32461488 + Intragenic
ENSMUSG00000116414 UCSC
Rpl34P3 chr3:40734433-40734832 + Intragenic
Intragenic
N/A UCSC
Rpl34P13 chr10:43380966-43381127 - Intragenic
N/A UCSC
Rpl34P14 chr12:86004168-86004369 + Intragenic
Intragenic
N/A UCSC
Rpl34P17 chr14:45484367-45484643 + Intragenic
N/A UCSC
Rpl34P9 chr7:101502248-101502523 + Intragenic
ENSMUSG00000110295 UCSC
Rpl34P23 chrX:128506839-128507112 - Intragenic
ENSMUSG00000081874 UCSC

Expression

Transcript Sequences

>NM_001005859.3
ACTTCCTGTCCGGCGCCGTCACACTTGACCCCTGAACTCACCcgccccttccttttcctcttccgggGACGGTGCTCAGAGGCACTCAGGATGGTCCAGCGTTTGACATACCGCCGTAGGCTTTCCTACAACACAGCCTCTAACAAAACtaggctGTCTCGAACCCCTGGCAACAGGATTGTTTACCTCTACACCAAGAAGGTTGGGAAAGCACCTAAATCTGCATGTGGCGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTGCGGCCCAAAGTCCTTATGAGACTGTCTAAGACACAGAAGCACGTCAGCAGGGCCTATGGCGGCTCCATGTGTGCCAAGTGTGTCCGTGACAGgaTCAAGCGGGCTTTCCTTATTGAGGAGCAGAAAATCGTTGTGAAAGTCTTGAAGGCACAAGCACAGAGTCAGAAAGCAAAATAGATATGCAcattttttaagtaataaaaatcaAGACTTGATCTACGCTTC
>NM_001287581.1
tccgggGACGGTGCTCAGAGGTATGGTGGCCTTCTTCTGCTCTGTGTTTTTTTACCGTTTACGATCCGTAGCCATCCGAGGCGTCAGGCGGGCGGGACGCCCTTGGGGTCGGGACTGTCGCTGGGGTCGGTGGTGAGGGACGAGGAGAGGCACTCAGGATGGTCCAGCGTTTGACATACCGCCGTAGGCTTTCCTACAACACAGCCTCTAACAAAACtaggctGTCTCGAACCCCTGGCAACAGGATTGTTTACCTCTACACCAAGAAGGTTGGGAAAGCACCTAAATCTGCATGTGGCGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTGCGGCCCAAAGTCCTTATGAGACTGTCTAAGACACAGAAGCACGTCAGCAGGGCCTATGGCGGCTCCATGTGTGCCAAGTGTGTCCGTGACAGgaTCAAGCGGGCTTTCCTTATTGAGGAGCAGAAAATCGTTGTGAAAGTCTTGAAGGCACAAGCACAGAGTCAGAAAGCAAAATAGATATGCAcattttttaagtaataaaaatcaAGACTTGATCTACGCTTC
>NM_026724.2
tccgggGACGGTGCTCAGAGGTATGGTGGCCTTCTTCTGCTCTGTGTTTTTTTACCGTTTACGATCCGTAGCCATCCGAGGCGTCAGGCGGGCGGGACGCCCTTGGGGTCGGGACTGTCGCTGGGGTCGGTGGTGAGGGACGAGGAGAGGTGCGTACCGGCCGAGGCCTCGGCTCGTAGACTCGGGAAGCCCGAGATCAAACCCGGCTTCCGAAGCGGCACTCAGGATGGTCCAGCGTTTGACATACCGCCGTAGGCTTTCCTACAACACAGCCTCTAACAAAACtaggctGTCTCGAACCCCTGGCAACAGGATTGTTTACCTCTACACCAAGAAGGTTGGGAAAGCACCTAAATCTGCATGTGGCGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTGCGGCCCAAAGTCCTTATGAGACTGTCTAAGACACAGAAGCACGTCAGCAGGGCCTATGGCGGCTCCATGTGTGCCAAGTGTGTCCGTGACAGgaTCAAGCGGGCTTTCCTTATTGAGGAGCAGAAAATCGTTGTGAAAGTCTTGAAGGCACAAGCACAGAGTCAGAAAGCAAAATAGATATGCAcattttttaagtaataaaaatcaAGACTTGATCTACGCTTC