Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Slirp
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name SRA stem-loop interacting RNA binding protein
Also known as -
Coordinate chr6:111476768-111486039
Strand +
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in mitochondrion morphogenesis and negative regulation of mitochondrial RNA catabolic process. Predicted to act upstream of or within flagellated sperm motility; single fertilization; and spermatid development. Predicted to be located in acrosomal vesicle; perinuclear region of cytoplasm; and sperm flagellum. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Orthologous to human SLIRP (SRA stem-loop interacting RNA binding protein). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Slirp

Retroname Coord Strand Genomic Region ENSG
SlirpP1 chr3:83174386-83174641 + Intergenic
 N/A UCSC
SlirpP2 chr10:47372341-47372677 - Intergenic
 N/A UCSC
SlirpP3 chr13:58989109-58989497 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001109507.1
GTTGCGAACAGTTTGGCCCGGAAGCAGAACTCCAAATTCCGGATCCTGTAAGTTCTTCCGAGGTCACGACCCCAGGCTTTGGTTCATTCAGTTTTAACATGGCAGCCTCCGCGGTAAAAGGACTAACTGCGTTGCGTTCCCGTACTGGTCGGCCTATAGCGTTTATTAGAAAAATTCCTTGGACCGCGGCATCGAGTGAGCTAAGAGAACATTTTGCTCAGTTTGGCCATGTAAGAAGGTGCACTGTACCTTTTGACAAAGAGACTGGCTTTCACAGAGGCATGGGTTGGGTTCAGTTTTCTTCACAGGAAGAACTTCAGAATGCACTACAAGAAGAACATCATATTATTGATGGAGTAGAAATCCATGTTCAACCTCAAAAACCAAAGGTTTTGCACGGGGCTCAAACATCTGATGAAGAGAAAGATTTCTGACATGATCAGTGTCCTGTCCACTAAATAAACAGAACTTAGACTTTTTCTAAATGTGtttttttttttttttttGAAACTAGTTTGCACTAAGCAAGAACTTGGTTTCCCCACTGCACAGTAGAAGAGTCCAACAGGGCAAATGCATCTGCCAGCACAGTTCGAGTGTATGAGCATCCACCTACTAACCATTTGGGGTAATTCATAAAGTTCTTACAGAAAATTTTACCCCTGGATTAGCAAGGAAGTAGCCTCAATTTTGTCAGGGGCAGTATTTTTTATAAGTGCTGCAAGATTGGAGAGGCACAAACACAGACCATTCTTTATAAAAACTACTGCGAAATAGAATATGCATTGCCTCTATCTCCTGGATGGAAGGAGTGTTGGGATCTATCACCCAGATTTGGTTTGTTTTTTTTTTTAATtttttttttaaatacagtccagttgttatccccctccccatcatctctccaaaaattcctcttcccctgtctccaagaggatgccccaccccaccccccaccccccaggcttccccattctttgtggtctcaagtctcttgagggttaggtccattttctctcactctggccagaccaggcagtcctctgctgtatacgtCAGATTTAATTTCAAGAGGCCCATCTACTCCTTCCTTCGCTTCTTGCCTTCATGTTCATGTTCCTTGGGGCGACTGCTATCTGAAGGTCTTTTAGACCCACCATGCTGTTTTGCTTCTTCCAAAAATTTGTCCAAACCAAAAGGATCTTCCTCAAACTGAACTGGTCCTTCTCGGCCTCTCTTTCTACCATCTGAACCTGAAAACTCTTTATCAGGAACAAATCTAGGGGGAAAAGAGAAGAAGTTATGAACTATTTCTGTTTTGCTGGTGTAAACAGGAATGAACAGCAACTGTCTGCATTGGTACCTGTTGGTCTTTATCCTGGTTTCGAGGTCATCGCCATACATGTCCTTGTCCAGATTTTTACTCGGCCTATAGATACTCTGAGCCATATCTTTGCCACCTCTCCAGGCTTGATCATAAACATTGTAAATTTCATCTTCTCCACCTGCAAATCCACTGTCCATACCCTGTGGAAAAAATGAATGACACCAAATAAAAATGTATACTTATCCAAAGCTGAATCTAAATGCTTAGGAATTAATAGACACACGTTTACAGCTAATTAAGAAATCGCAACTACAATATTTATGTAAAATAGTAAGTATACAGTTGTTTATACACATTTGAGTTCTTACTTAGAAACTAAAATTAAATCAGAGTATTCATTAGATTAGGttaatcccagcactaatgaggcaagcaggtgagtctctgccagtctgaatatcacgttctaagacagccagagctatataacattcccggtctcaCACGACAGCAAAGTTCTGACTAACCAAAAATAAAAGACAATGgctaggcgtggtgacgcatagctttaatcccaacactcacaagcagaggcaggcagatctggtttacaaagtgaattcaggacagcaaggatacacctagaacccatcttcaaaacccaaaaCTGAAGAACAAATAAAAACCCCAATCCAAGaaaaacaagacagaaagttggctgtgtagagaaggaggggtggatctgggagcaggtggaggagagtgaatatggtaaaattcaattgtatgaagtcctcaggaaaaaaagaaaaAGAAAATCAACTAAAAATGTCATTAAAATTGAAGGATTGTATTGTGGGTACTGGATAATGATGCTGAGAAAAGTTACCTCAACTGCCTGAGAATGTCAGTATTAATTAAAGCACAAGATCATAAGGTCCTCAATGAAAATCTTAAAAACTTTAACTCAGCTTTTAAAAGGTTTAAGCTCAAGGTCAGAAGAGATGGCTGCTGTGAAAGATTTACTCCTGTGGCGCCTCCACCCCAACTCCTGCTCAGTCTGGCTGATGCTGCAAAGCAGTTATGAAAGAAGCTTTGGCATCAAAGCATTCAAGGTTGAATCTCAGTTCCATCAATGACTCGATCCTGTCTTAATTATCCATGAGAGGTAATAGGGTGggtgctgcagagacagttcagtgttaaagcagtttctacataaacatgagggcccaggcttggattcctaggacccatgtaaatgataggtgggtgtggaagcttgcgtaactccattctctgaagatgcagacaggaaatctcagagcaggctgggtaattctatcagtgagttctgggatggactgagagatctgcctcagtgaataatgtggaaggcagagtgataaagacaattcccaacatcaatttccaacataaacatatgcatgtacacatacTGCCTACACATGCAAACATGCATACGAATG