Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Prpf6
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name pre-mRNA splicing factor 6
Also known as 1190003A07Rik|2610031L17Rik|ANT-1|U5-102K
Coordinate chr2:181243112-181297454
Strand +
Gene summary Predicted to enable several functions, including androgen receptor binding activity; identical protein binding activity; and transcription coactivator activity. Predicted to be involved in spliceosomal tri-snRNP complex assembly. Predicted to act upstream of or within RNA localization and positive regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Predicted to be part of nucleus. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and immune system. Human ortholog(s) of this gene implicated in retinitis pigmentosa 60. Orthologous to human PRPF6 (pre-mRNA processing factor 6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Prpf6

Retroname Coord Strand Genomic Region ENSG
Prpf6P1 chr14:97206696-97207190 + Intergenic
 ENSMUSG00000115052 UCSC
Prpf6P2 chrX:159081466-159081852 + Intergenic
 ENSMUSG00000083318 UCSC

Expression

Transcript Sequences

>NM_133701.2
TTTCCGTGACCCAGCTCTCTACTTCCGGTGCGCGGGTGACGTAGTGCCTGCATCTCTTACTGCTGCGACACCCGGAGGACTCTGAGTCTTCTGTCGTATACTTGCTCCCCTGCTTTTCTGTGTTTCGGTCAATAACACCGCcatgaacaagaagaagaagccgTTCCTGGGCATGCCTGCGCCGCTGGGCTACGTACCCGGGCTGGGCAGGGGTGCCACTGGCTTCACCACCCGATCAGACATCGGGCCTGCTCGGGATGCAAATGATCCTGTGGATGATCGCCATGCCCCACCAGGGAAGAGAACTGTGGGGGACCAGATGAAGAAAAATCAGGcggctgatgatgatgatgaagatctGAATGATACCAACTACGATGAGTTTAATGGCTATGCTGGGAGCCTCTTCTCAAGTGGGCCCTATGAAAAAGATGATGAGGAAGCAGATGCTATTTATGCAGCTCTGGATAAAAGGATggatgagagaagaaaagagagaagAGagcaaagggagaaagaagagattgagaaataccgaatggaaCGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAAGAGGAAGCTGGCAGAAGTCACAGAAGAAGAGTGGCTGAGCATCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTATGAGAAGCTGACTCCTGTTCCTGATAGTTTCTTTGCCAAACATTTACAGACTGGAGAGAACCATACTTCTGTGGATCCCCGACAGACTCAATTTGGAGGTCTGAACACACCCTACCCGGGAGGCCTGAACACTCCATACCCAGGTGGAATGACACCTGGATTGATGACACCTGGTACAGGGGAGCTGGACATGAGGAAGATTGGCCAGGCAAGGAATACCCTGATGGACATGAGGCTTAGCCAGGTATCTGACTCAGTGAGTGGGCAGACTGTTGTGGACCCCAAAGGCTACCTGACAGATCTAAATTCCATGATCCCAACCCATGGCGGGGACATAAATGACATCAAGAAAGCACGACTACTTCTCAAATCTGTTCGAGAAACAAACCCTCATCACCCACCAGCTTGGATTGCATCAGCTCGCCTGGAAGAAGTCACTGGAAAGTTACAAGTAGCTCGAAACCTTATTATGAAAGGGACAGAGATGTGCCCCAAGAGTGAAGATGTCTGGCTAGAAGCAGCTAGGTTACAGCCTGGGGACACAGCCAaggctgtggtggcacaagctGTCCGTCATCTCCCGCAGTCTGTTAGGATTTACATCAGAGCAGCAGAGCTAGAAACAGACATTCGAGCAAAGAAGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTTGAAGAGCCTGAAGATGCTAGAATCATGCTGAGCCGAGCAGTAGAGTGCTGTCCCACCAGTGTAGAGCTATGGCTTGCTTTGGCAAGACTAGAAACTTATGAAAATGCTCGCAAGGTCTTAAATAAAGCACGTGAGAACATTCCTACAGATCGGCACATCTGGATCACAGCTGCCAAACTGGAGGAGGCCAATGGGAACACTCAGATGGTGGAAAAGATCATTGACCGAGCCATCACCTCCCTACGGGCCAATGGTGTAGAGATCAACCGCGAACAGTGGATCCAGGATGCTGAGGAGTGTGACAGGGCAGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCGGTATTGGGATTGAGGAGGAAGATCGCAAACACACCTGGATGGAAGACGCTGACAGTTGTGTGGCCCACAATGCCCTGGAGTGTGCACGAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTTACGAGCTGCCTACTTTGAGAAGAATCATGGTACCAGGGAGTCTCTGGAAGCACTCTTGCAGAGGGCTGTAGCCCACTGCCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGGGATGTACCTGCAGCAAGGAgcatcctggccctggcctttCAGGCCAACCCCAACAGCGAAGAGATCTGGTTGGCGGCTGTGAAGCTGGAGTCAGAGAACAATGAATACGAGCGAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCGCACCCACTGCCCGTGTATTCATGAAGTCTGTGAAGCTGGAGTGGGTTCTGGGGAACATCTCTGCGGCGCAGGAGCTGTGTGAGGAGGCTCTGAGGCACTATGAAGATTTCCCCAAGCTGTGGATGATGAAGGGGCAGATTGAGGAGCAGGGAGAACTGATGGAGAAGGCCCGGGAGGCCTACAACCAGGGGCTGAAGAAATGTCCTCATTCCACACCGCTTTGGCTCTTGCTTTCCCGACTAGAGGAAAAGATTGGGCAGCTGACACGTGCTCGGGCCATTTTAGAGAAATCTCGTCTGAAAAACCCAAAGAACCCTGGGCTATGGTTGGAGTCAGTGCGGCTGGAGTACCGGGCAGGGCTGAAGAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTCTGGTATCCTGTGGTCTGAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACCCCCATGTGCTTTTAGCTGTGGCTAAGTTGTTCTGGAGTGAAAGAAAGATCACCAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACTCAGATCTGGGGGATGCCTGGGCCTTCTTCTACAAATTTGAACTGCAGCATGGAACTGAGGAGCAACAGGAGGAGGTGAGGAAACGCTGTGAGAATGCAGAGCCCCGACATGGAGagctgtggtgtgctgtgtccaAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGTGGCCGCCCGCATCAAAAATACCTTCTGATAGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTTTTATAGAGTTA