Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Snx4
Plot displaying the genomic locations of a parental gene (in chr16) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name sorting nexin 4
Also known as 1810036H14Rik
Coordinate chr16:33071826-33119932
Strand +
Gene summary Predicted to enable phosphatidylinositol binding activity and signaling receptor binding activity. Predicted to be involved in endocytic recycling; positive regulation of histamine secretion by mast cell; and protein transport. Predicted to be located in early endosome membrane and plasma membrane. Predicted to be part of SNARE complex and cytoplasmic dynein complex. Orthologous to human SNX4 (sorting nexin 4). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Snx4

Retroname Coord Strand Genomic Region ENSG
Snx4P3 chr17:22402664-22405092 - Intergenic
 ENSMUSG00000117252 UCSC
Snx4P1 chr7:64820826-64821506 + Intergenic
 ENSMUSG00000108745 UCSC
Snx4P2 chr9:86198205-86198740 - Intragenic
 ENSMUSG00000083731 UCSC

Expression

Transcript Sequences

>NM_080557.2
CAGCTATGGAGCAGGCACCTCCGGACCCCGAGAAGCTCTTGCAGCCTGGACCCCTGGAGCCGCTGGGTGGCCCTGGCGCTGTGCTGGAGGCCGCGGTCGGTGAGGAGAACGAGGGCACCCGAGAAGACGGCTCAGGGGTCGACACGATGACGGGAAATAATTTTTGGTTGAAGAAAATAGAAATCAGTGTttcagaagcagagaagagaacCGGAAGGAACGCCGTGAACATGCAAGAAACGTACACTGCCTACCTCATCGAGACTCGGTCAGTTGAGCATGCCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGAGGCGGTACAGTGAGTTCGAGTTGTTGAGAAACTACCTTCTAGTGTACTACCCACATGTTGTTGTGCCACCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGCATAAACTCTCTGCTGACAACATGGACCCAGACTTTGTGGAGAGACGACGCGTGGGCTTAGAAAACTTCCTCTTGAGGGTTGCTTCACATCCTGTCCTTTGTAGAGACAAAATCTTCTATTCATTTTTAACCCAGGAAGGTAACTGGAAGGAGACTGTGAATGAGACTGGATTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATGCAACATTCAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCTGAGGCACTACAGTGATGAGCTGCAGTCTGTCATCTCGCATCTCCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGGAGAGTTTTTAGtgaatggaGTGCCATCGAAAAAGAAATGGGGGATGGGCTGCAGAGTGCTGGGCATCACATGGACGTGTATGCATCTTCTATTGATGATATTTTGGAAGATGAAGAGCACTATGCAGATCAGCTGAAGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGCAGGAAGCATGAGCTTATGCAGTATGACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCGAGGAGCTGGCCACCGGGACTGTGAGAACATTCTCGTTGAAGGGAATGACTACCAAACTCTTTGGTCAAGAAACTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGGAACAGCAGCTGAAGTCTAAAAATCTGGAAGGCAGagaatTTGTGAAAAATGCATGGGCTGATATTGAACGcttcaaagaacaaaagaaccGGGACCTAAAGGAAGCTCTCATCAGCTATGCTGTCATGCAGATCAGCATGTGCAAAAAGGGAATTCAGGTTTGGACCAATGCTAAAGAATGCTTCAGCAAGATGTAACCCCATGAAGTGACTTTTCTCTGCAATCAAAGCCCCAAAACGAAGCACAAGTAAAAGAAAATCTATTGCTACCTTATACATAGAAGCATACTGTACATGGAACAAATCAGCTTTCTTTAAGCATAGTTGTGTTCATATAGCACAAATGATACATTTTAATGaagaataaatattataatttgAAGTTTTGGGGACTGGTGCTGATTCCAAAAAAGTTAATTTAATAAGATAACCAACAGATTGTTAGTCAGGCTCCTGATCCAGTGCCTCCGTCAGGATGTGAGTTAATCTCCATGTGCACCTCTCAGTGCCCACTGTCCAGATCTCTTCACGGGCAGTTCTTCCCAGACCAGACGCCCAGATTTACTTTGTAGGACCCACTTCTGCTATACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGTGAAGTCTAAGGTTTTCTTCTGTGTTCCTAGATCCTGTACCATCTGCAACACTAGAAAATGCCTTCAGTTTGTGTCTCACCAAAATTTTGATACTGGTCAGAAATTTTATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAATAGATACATTATTATAATCTAGAAATTGCTATATAGAGAGTATTAATTTAACATTATTATTCTCAGATAAGAAGTGTTAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTTCAGGGTACGAGGTGTAGCATCTCCATGTGTGAGACACTCGTAGTGAGCACATGTGAGCGGTACCGTCACCATTAATGTGCGTTTCTGTTGCCTGGCTGTGATTTTTGTAAAGATAAATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAATGTTTTAAAACTATACTCAGTACTGTTTGACATTTGACTTTTTTACATGTTTAAAATGTTGCTGGATTTTTGTGCTGTTTGCCAAACTTATATAATAAAGGAAGTGTTGTGTTTATTTCCA