Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Gene Name Cactin
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name cactin, spliceosome C complex subunit
Also known as 2510012J08Rik
Coordinate chr10:81156937-81162085
Strand +
Gene summary Predicted to be involved in several processes, including cellular response to cytokine stimulus; negative regulation of cytokine production; and negative regulation of signal transduction. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in cytosol and nuclear speck. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in cytoplasm. Orthologous to human CACTIN (cactin, spliceosome C complex subunit). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cactin

Retroname Coord Strand Genomic Region ENSG
CactinP1 chr1:34968553-34969724 + Intergenic
 ENSMUSG00000103716 UCSC
CactinP3 chr11:105055602-105056184 - Intergenic
 ENSMUSG00000081965 UCSC
CactinP4 chr15:24357714-24358482 + Intergenic
 ENSMUSG00000115079 UCSC
CactinP2 chr5:110629327-110629873 - Intergenic
 ENSMUSG00000105603 UCSC

Expression

Transcript Sequences

>NM_027381.2
GAGGGAGTAAGTCATTCCCTGTGATCAGGCGCACTTTGGACAGTCCTTAGAGCGCCGCGCCAAAGGAAAGCCCCCGGCGCCAAGCTTCCTGGTTGTTTACGCGCGCGCATGCGCGGCGCGGGCCGCCAAATGGGTCGGGACTCTCGCTCGCGCTCACGGTCTGTGGGTCGCAGGGGTCGGAAGCAGCGGAGTCGAAGCCGGGGCCGGAGCCGCAGCCGGAGTCGGAGTCGGAGTCGGAGTCGGAgtcggagccggagccggagccggagccatGGGCGGAGCAGCCGAAGGCGACGGGAACACGAGCGGCGGCGCGAACGCAAGCGGCGCAGCCGAGGGCGCAGGTCAGATTCGGAAGGAGAGCAGCGGCAGAAGTCTAGGAGGCGAAGCCAGAGCCTTCGACCACCCCGATGGCACTCACAGAACCAGTCCTCATGCTCTGACTCGGGTGAGGAGCGGGCTCAGGGCTCCTGGGCCCGTAAGGGTCACAGGCGCTCGTGGTCCCCGGGGTCATCAGCGTCTAGCTTGGACTCCCCAAGACGCTCCCGGAGTCCCGGGACAGCTACCCTGGCCCTGAGCCAGCAGCAGAGCCTGCAGGAACGGCTGCGGCTTCGTGAGGAGCGGAAGCAGCAAGAAGAGCTGCTCAAGGCCTTCGAGACGCCTGAGGAGAAGCGTGCGCGGCGACTGGCCAAGAAGGAAGCTAAGGAACGCAAGAAGCGGGAGAAGATGGGCTGGGGTGAGGAGTACATGGGCTACACCAACACCGACAACCCCTTTGGAGACAACAACCTGCTCGGCACCTTCATCTGGAACAAGGCCTTGGAGAAGAAGGGCATCAGCCACCTGgaggagaaggagctgaaggagcgcAACAAGAGGATCCAGGAAGACAACCGTCTGGAGCTGCAAAAGGTCAAACAGCTGCGGCTAGAGCGGGAACGGGAGAAAGCCATgagggagcaggagctggagtTGCTGCAGCGGGAGAAGGAGGCAGAACACTTTAAGACGTGGGAGGAGCAAGAGGACAGCTTCCACTTGCGGCAGGCCAAGCTTCGCTCCAAGATCCGAATCCGAGATGGGCGAGCTAAGCCCATCGACCTCCTGGCCAAGTACATCAGCGCAGAGGATGACGACCTGGCGGTGGAGATGCACGAGCCCTACACCTTCCTCAACGGCCTCACTGTGGCGGACATGGAGGACCTACTAGAAGACATCCAGGTGTACATGGAACTAGAGCAGGGCAAGAATGTGGACTTCTGGCGGGACATGACGACCATCACAGAGGATGAGATTGCCAAGCTCCGCAAGCTGGAGGCCTCTGGCAAGGGCCCAGGTGAGCGCCGTGAGGGAGTCAATGCCTCAGTCAGCTCCGATGTGCAGTCGGTGTTCAAGGGAAAGACGTACAACCAGCTGCAGGTCATCTTCCAGGGCATCGAGGGCAAGATCCGGGCCGGGGGCCCCAACCTGGACATGGGCTATTGGGAGAGCCTGCTGCAGCAGTTGCGTGCACACATGGCCAGGGCCAGGCTCCGTGAGCGCCACCAAGATGTTCTTAGACAGAAGCTGTTCAAGCTGAAGCAGGAGCAGGGTGTGGAGAGCGAGCCGCTGTTCCCCATCCTCAAGTCGGAGCCCTCGGCCGCCCACAGCCCCGAACCTGAGGAGCGACCCCCCAGCCCCGGGACTTCAGTGGACCCAGTGGAGCCTGTGGAACCTGAGGAGGCCACAGCACCAGGAGAAGCAGAGGGGGAGGCAGAAGGGGAGGCAGTGCTGATGGAGGAAGACCTGATCCAGCAGAGCCTGGCGGACTATGACGCCGGCCGCTACAGCCCACGGCTGCTCACGGCACACGAGCTGCCTCTGGACGCACACGTGCTGGAGCCTCACGAGGACCTGCAGCGCCTGCAGCTGTCTCGCCAGCAGCTTCAGGCTACAGGTGATGCGAGTGAGAGCGCTGAGGACATCTTCTTCCGGCGTGCGAGGGAGGGCATGGGGCAGGATGAGGCACAGTTCAGCGTGGAGATGCCACTGGGCGGCCGGGCCTATCTGTGGGCCGACAAGTACCGGCCGCGAAAACCTCGCTTCTTCAACCGCGTGCACACGGGCTTCGAGTGGAACAAATATAACCAGACGCATTATGACTTCGACAACCCTCCACCCAAGATTGTGCAGGGCTACAAATTCAACATCTTCTACCCAGACCTCATCCGTAAGCGCGCCACACCTGAGTACTTCCTGGAGGCTTGTGCAGACAACCGGGACTTTGCCATTCTGCGCTTCCATGCGGGACCGCCCTACGAGGACATCGCCTTCAAGATCGTCAGTCGTGAGTGGGAGTATTCGCACCGCCATGGCTTCCGCTGCCAGTTCGCCAATGGAATCTTCCAGCTCTGGTTCCACTTCAAGCGCTACCGCTACCGTCGGTGACACCTGTGGGCTGCCTGCCCCTGTCAGGCTGGCCCCTGGACAGCTCCCAGGTGGGAAGGCCAAGAGGACCAGGAGGCCTCCTTCAGAAGCCGTAGGAATCTGTGGACTTCAGTCACCAGCACTGTGCTGGCCGCAGCCCCTCTGGCAGATCCCTGCCTGTCCTGAAAGGATTTTTAACTGTTCTTGGGAAGACTGCTTGGGGTGGCAGAAAGGTCTTGTTTCCATGGACTTGTTCAACCGGGGAACCCCGTGTGGTTTTGATACATTTAATAGAAAGCTTATTCTAAACTGGCTTCT