RCPedia: Genes

Summary

Gene Name	Sfpq	Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Mus musculus
Full Name	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Also known as	1110004P21Rik\|2810416M14Rik\|5730453G22Rik\|9030402K04Rik\|D4Ertd314e\|Gm12940\|PSF\|REP1
Coordinate	chr4:126914504-126944894
Strand	+
Gene summary	Enables chromatin binding activity and transcription cis-regulatory region binding activity. Involved in several processes, including dendritic transport of messenger ribonucleoprotein complex; histone H3 deacetylation; and negative regulation of circadian rhythm. Acts upstream of or within cellular response to DNA damage stimulus; chromosome organization; and positive regulation of sister chromatid cohesion. Located in paraspeckles. Part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; lung mesenchyme; sensory organ; and testis. Orthologous to human SFPQ (splicing factor proline and glutamine rich). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sfpq

Retroname	Coord	Strand	Genomic Region	ENSG
SfpqP1	chr13:86013172-86013376	-	Intergenic	ENSMUSG00000114447	UCSC

Expression

Transcript Sequences

>NM_023603.3
GAGGACAAAGGCGGCGCGCAGCTTGTGTCGTCCGCCATTTTGTGCTCAGCAAGGTGGCAACCACGTTCCCTGAGCGACTTCTCCGCTTCTGCCTCGACCGCCCCTTGACTACAGCTATGTCTCGGGATCGGTTCCGGAGTCGCGGTGGCGGCGGTGGAGGCTTTCACCGGCGTGGAGGAGGTGGCGGCCGCGGCGGCCTTCACGACTTCCGCTCTCCGCCGCCGGGCATGGGCCTCAACCAGAACCGCGGCCCCATGGGCCCGGGCCCTGGCGGCCCGAAGCCGCCGCTCCCGCCTCCACCTcctcaccagcagcagcagcagccgccgccGCAGCAGCCTCCGCCGCAGCAGCCGCCGCCGCACCAGCAGCCGCCGCCGCACCAGCCGCCCCATCAACAGCCCCCGCCTCCGCCGCAGGAATCCAAGCCCGTCGTCCCCCAAGGCCCCGGCTCGGCGCCGGGGGTGAGCAGTGCGCCTCCGCCGGCGGTCTCGGCTCCGCCCGCCAACCCCCCGACCACCGGCGCCCCTCCGGGCCCTGGTCCAACCCCGACTCCGCCGCCCGCCGTCCCCTCCACCGCCCCCGGACCGCCTCCCCCATCGACGCCGAGCAGCGGAGTCTCGACCACCCCTCCACAGACCGGCGGCCCTCCGCCACCGCCCGCCGGGGGCGCCGGGCCGGGGCCTAAGCCGGGGCCAGGCCCTGGCGGTCCAAAAGGCGGCAAGATGCCCGGTGGGCCTAAGCCTGGAGGTGGCCCGGGCATGGGCGCTCCTGGTGGCCACCCGAAGCCACCACACCGAGGTGGCGGCGAGCCCCGTGGGGGCCGGCAGCATCATGCGCCCTACCACCAGCAGCACCACCAGGGGCCCCCTCCCGGCGGACCGGGACCGCGCACGGAGGAGAAGATCTCCGACTCGGAGGGATTTAAAGCCAACTTGTCTCTCTTGCGGAGGCCTGGAGAAAAAACTTACACACAGCGCTGTCGGTTGTTTGTGGGGAATCTACCTGCTGATATCACAGAGGATGAATTCAAAAGACTGTTTGCTAAATACGGAGAACCCGGAGAAGTTTTTATCAACAAAGGCAAAGGGTTCGGGTTCATTAAGCTTGAATCTAGAGCCTTGGCTGAAATCGCCAAAGCTGAGCTTGATGATACTCCCATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACACACGCTGCAGCCCTGTCTGTTCGAAATCTCTCTCCTTATGTTTCCAACGAACTTTTGGAAGAGGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGCGGAAGATCTACAGGGAAAGGCATTGTTGAGTTTGCTTCCAAGCCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCCTACTGACAACGACTCCTCGCCCAGTCATTGTGGAACCACTTGAACAGTTAGATGACGAAGATGGTCTTCCTGAAAAGCTGGCCCAGAAGAATCCAATGTATCAAAAGGAGAGAGAAACACCACCTCGTTTTGCTCAGCATGGCACATTTGAGTATGAATATTCTCAACGATGGAAGTccttggatgaaatggaaaaacagCAAAGGGAACAAGTTGAAAAAAACATGAAGGATGCTAAAGACAAATTGGAAAGTGAAATGGAAGATGCTTACCATGAACACCAAGCAAATCTTTTGCGCCAAGATCTGATGAGACGCCAGGAAGAATTAAGGCGCATGGAGGAACTTCACAGTCAAGAAATGCAGAAACGTAAAGAAATGCAGTTGAGGCAAGAGGAGGAACGGCGTAGACGAGAGGAAGAGATGATGATTCGCCAACGTGAGATGGAAGAACAAATGAGACGCCAACGAGAAGAAAGTTACAGCAGGATGGGCTACATGGATCCAagagaaagagacatgaGAATGGGTGGTGGTGGAACAATGAACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACcactaggtggtggtggtggcataggTTATGAAGCTAATCCTGGAGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGCGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGTCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATatggtagagggagagaagagtaTGAAGGGCCAAATAAAAAACCCCGATTTTAGATATTTAGGCTTTCATTctagtttggttttgtcttttcttgtttAGATACCACTTAAATTCTTGGCATTTTAGTAAGCAAGCTACCTTTTTATGGATGTTAGCAGTTTATTGACCTGATATTTGTAAATGGCCTGTTTGGGCAGGTAAAATTATGTAACGCAGTGTTCAAAACAGGAGAAaaaattttttcatttacttttttttttaactgtataaTGTTTCTCAAGTTAATGGCAGTGTACCTTGTGCCACCGAATTTCCAAagtgtaccattttttttttactgtgcttcaaataaatagaaaaaatagtTATAATACTGATCTTCAACTTTGCTATTCATGCTTCTATGCACATTAGGCTAGGTATTTCACTTGGAAAGCATGAGCGTGTGTAGGCCTTTGAGTGGCATAAGCCATTTCTGGGAAATGTAACAGGAGGCTAAGTACTGCTTTCTACAAATGGTGCCCCCCCTTGTTAAAAAGAAATGCATACTGAAGTAATTAGGATTTGTTTGGCATTATAGGAAGCAGGCTGGTGCTCAGCATTTTTAAATGGTTATGTTAGAAAAGTTGAACTTGCAAGTCTTAATTCAGGAACATGTATTAAGATTATGGATGGGTGAAAACTATTGGTAGTGAGAGAAAGAGTTTGTTATTTTGGTTAAATGGATCCCTTATGGCCCTATCTATGATTCTTTCCTTGAAAGCTTTTGAAAATGGAAAGATCATCTTGTTGCGTTTCTCcctgttgttttttaaaagaatcccAAGCCCTACAAATGGCTTGTACTGAACTTTTGCATTTGAATTAAAGATTGTTAAACATGAAGCCTTTTCATGTATTACTTCAAGTGATTTAAAAGATGGGACTTAGTCGGGAATTTTAACTTGAAGAGTTAAGGGTTAGCCAACTATAAGGACTAGCCTTATGTACTCTAACATACACCTTCCTGTGTTACTTCTATGGAGCAAAGTCTGTAGTCTGAAAATACTGGTTCTCTTGGAGAACTAGTGGTGACTGTTACCAAGTAGGACTGTCAAGTAGTCTCACTATGGAGTTGAACTGTTTTTATATATCAGTCTTACAGTGTAGCATTAAACCTGGAGATAGTTGcttaggctacatagtaaaaatATGCTTTCCTCCCACCATAAGCTTGGGGATGTTTTGATGATGTCAGTTCATTGTTAACTTCATTGAATTTCCTTTCGTTAGAGCAAGAGACTTTCTGACTTGATGATAATAAAGTAGATTGGTTACTGTTGGGA