Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Fcf1
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name FCF1 rRNA processing protein
Also known as 1110008B24Rik
Coordinate chr12:85017704-85030077
Strand +
Gene summary Acts upstream of or within endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human FCF1 (FCF1 rRNA-processing protein). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Fcf1

Retroname Coord Strand Genomic Region ENSG
Fcf1P5 chr17:52316280-52316461 + Intergenic
ENSMUSG00000117170 UCSC
Fcf1P1 chr4:69610191-69610888 + Intergenic
ENSMUSG00000082998 UCSC
Fcf1P4 chr9:95307792-95308472 + Intergenic
ENSMUSG00000101459 UCSC
Fcf1P2 chr5:150952510-150952649 - Intragenic
N/A UCSC
Fcf1P3 chr9:40075654-40076323 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_028632.2
CGATTCCGGAAGAAACAGGAGTGCGGCGTGAACATGgggaagcaaaagaaaacaaggaaatatGCGACTATGAAGCGAATGCTCAGTCTGAGAGACGAGCGACTTAAAGAAAAGGATAGGttgaagcctaagaagaaagagaagaaagatccGAGCGCGCTGAAGGAAAGAGAAGTcCCCCAGCATCCTTCCTGCTTGTTCTTCCAGTATAATACACAGCTGGGTCCACCTTACCACATCCTTGTCGATACCAACTTCATCAACTTTTCCATTAAGGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTCTGTATGCCAAGTGTATCCCTTGTATAACTGATTGTGTAATGGCTGAAATTGAGAAATTGGGACAGAAGTTTCGTGTGGCACTAAGAATCGCTAAGGATCCACGGTTTGACCGATTGCCGTGCACACACAAAGGAACCTACGCTGACGACTGCTTGGTACAGAGAGTAACTCAGCACAAGTGTTACATTGTGGCCACAGTTGACCGTGACCTCAAACGAAGAATCCGGAAGATCCCTGGCGTCCCTATCATGTACTTATCTAACCACAGATACAACATCGAGCGGATGCCAGATGATTATGGAGCCCCTCGCTTCTAATTCTCACTCCACAGATTCTGCCTGCCATTCTTGGACCATCTCTCTCTTGTCAGTTAATTAAAcacattttctgatttttaaaaatg