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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Mrpl47
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name mitochondrial ribosomal protein L47
Also known as 4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1
Coordinate chr3:32781646-32790904
Strand -
Gene summary Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. This gene is immediately adjacent to the gene for BRG1/brm-associated factor 53A (also known as BAF complex 53 kDa subunit protein A in humans) in a tail-to-tail orientation. [provided by RefSeq, Jul 2008]

Retrocopy(s) from Mrpl47

Retroname Coord Strand Genomic Region ENSG
Mrpl47P4 chr6:79518175-79519039 + Intergenic
 ENSMUSG00000107618 UCSC
Mrpl47P1 chr2:138713768-138714564 + Intragenic
 ENSMUSG00000081009 UCSC
Mrpl47P2 chr2:150147676-150148537 + Intragenic
 ENSMUSG00000084320 UCSC
Mrpl47P3 chr4:123539558-123539741 - Intragenic
Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_029017.2
GGTCTCCATTAGAAACATGGCTGCGACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCCTGAAGGCAGCTTGTTCCCTAGTAAATCCCAAGGACGCTGCTCACTCGGGTTGCAGGTCTTCTCTTAGTTTGTTACATAAGAACACACCACATGTCACATCTTTTCTCCAGTGTAAATTACTTCATACCACGTTGTCAAGGAAAGGACTGGAAGAATTTTTTGATGACCCAAAGAATTGGGGGGAAGAAAAAGTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGAACAAAAGTAACGAAGACTTACATAAGCTTTGGTATGTCCTTCTGAAGGAAAGAAACAtgcttctaactctggagcagGAGGCCAAGCGACAGAGGTTGCCAATGCCAAGTCCGGAGCGCTTAGAAAAGGTCGTTGATTCCATGGATAACGTAGATAAAGTTGTCCAGGAGAGGGAAGATGCTCTAAGGCTTCTTCAGACCGGTCAAGAAAAGCCCAGACCCGGTGCTTGGAGAAGGGACATCTTTGGACGAATTGTCTGGCACAAATTCAAGCAGTGGCCTATACCTTGGTACCTAAATAAAAGATACAACAGGAGGCGGTTCTTCGCAATGCCTTATGTGGATCGCTTTATCAGACTAAGAATTGAGAAACACGCCCGCATTGAAGCAAGAAAGAGAAgtttacagaaaaagaaagaaaaaattctccATGCAAAGTTCCCACATCTCTCTCAAGAACGGAAATCAAGTAGTGTCTAAGATGAGACCCAGAAGTCTGGTTCCATTGTTCTTAAAGCCTGTGTCCTGACGTGAATACCTGTTAAGCAGTTTATAAAGAAATGTTCTTGTCAAGTGA