Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps27a
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S27A
Also known as 0610006J14Rik|Uba52|Ubb|Ubc
Coordinate chr11:29495842-29498040
Strand -
Gene summary Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Located in myelin sheath. Orthologous to human RPS27A (ribosomal protein S27a). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps27a

Retroname Coord Strand Genomic Region ENSG
Rps27aP1 chr1:138843312-138843626 - Intergenic
ENSMUSG00000103850 UCSC
Rps27aP6 chr2:36027578-36027717 - Intragenic
ENSMUSG00000081496 UCSC
Rps27aP7 chr2:52442093-52442257 + Intragenic
ENSMUSG00000082132 UCSC
Rps27aP9 chr2:69567669-69568088 - Intragenic
ENSMUSG00000082345 UCSC
Rps27aP13 chr4:34389458-34389896 - Intergenic
ENSMUSG00000082649 UCSC
Rps27aP16 chr7:51107694-51108309 + Intragenic
ENSMUSG00000109059 UCSC
Rps27aP2 chr1:33521279-33521632 + Intragenic
ENSMUSG00000101682 UCSC
Rps27aP3 chr1:52561447-52561890 + Intergenic
ENSMUSG00000101501 UCSC
Rps27aP20 chr10:47849565-47849817 + Intergenic
ENSMUSG00000111911 UCSC
Rps27aP21 chr13:12439986-12440527 - Intergenic
ENSMUSG00000113931 UCSC
Rps27aP22 chr14:46095501-46096032 - Intergenic
ENSMUSG00000084276 UCSC
Rps27aP23 chr16:16360102-16360626 + Intragenic
ENSMUSG00000089861 UCSC
Rps27aP24 chr19:16693106-16693653 + Intragenic
ENSMUSG00000114931 UCSC
Rps27aP8 chr2:57518966-57519207 - Intergenic
ENSMUSG00000081642 UCSC
Rps27aP10 chr2:92391620-92392063 + Intergenic
ENSMUSG00000080860 UCSC
Rps27aP4 chr2:132822846-132823106 - Intergenic
ENSMUSG00000084393 UCSC
Rps27aP5 chr2:145352080-145352610 - Intragenic
ENSMUSG00000084178 UCSC
Rps27aP11 chr4:120971954-120972411 - Intergenic
ENSMUSG00000081423 UCSC
Rps27aP12 chr4:131875693-131876233 - Intergenic
ENSMUSG00000081394 UCSC
Rps27aP15 chr6:6329731-6330250 - Intergenic
ENSMUSG00000097669 UCSC
Rps27aP14 chr6:122433823-122434367 + Intragenic
ENSMUSG00000055093 UCSC
Rps27aP19 chr9:83291674-83292217 + Intragenic
ENSMUSG00000058838 UCSC
Rps27aP25 chrX:161359587-161359960 - Intragenic
ENSMUSG00000082007 UCSC
Rps27aP17 chr8:112036291-112036759 - Intergenic
N/A UCSC
Rps27aP18 chr8:53947155-53947327 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001033865.1
ATCATTTCGAGGCCATTCTGAGGTAAACCGAGAAAAGAGCGTAAAGAAACCGAGCGAACGAGCAAATCTGGCACTGCGTTAGACAGCCGCGATTCCGCTGCAGCGCGCAGGCACGTGTGTGGCCGCCTAAGGGGCGGGTCCTTCGGCCAGGAGACCCCGTCGGCCACGCTCGGATCTTCCTTTCCGATCCGCCATCGTGGGTGAGTGTATGCTCTGTGGCCGCGCTCTGGCTAGTGGCGCTACGCGTCGCTCTCACGGGTGTCGTCGGATCTAATCCGTCTCTTTTCGAATGCAGGTGGAGCCGCCGCCACGATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTgctaagaaaaggaagaagaagtctTACACCACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAAGGTGGATGAAAATGGCAAAATTAGCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAAGCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAGTTGTGTATGCGTTAATAAAAAGAAGGAACTCGTACTTA
>NM_024277.2
ATCATTTCGAGGCCATTCTGAGGTAAACCGAGAAAAGAGCGTAAAGAAACCGAGCGAACGAGCAAATCTGGCACTGCGTTAGACAGCCGCGATTCCGCTGCAGCGCGCAGGCACGTGTGTGGCCGCCTAAGGGGCGGGTCCTTCGGCCAGGAGACCCCGTCGGCCACGCTCGGATCTTCCTTTCCGATCCGCCATCGTGGGTGGAGCCGCCGCCACGATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTgctaagaaaaggaagaagaagtctTACACCACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAAGGTGGATGAAAATGGCAAAATTAGCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAAGCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAGTTGTGTATGCGTTAATAAAAAGAAGGAACTCGTACTTA