Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Lsm6
Plot displaying the genomic locations of a parental gene (in chr8) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as 1500031N17Rik|2410088K19Rik
Coordinate chr8:79531497-79547781
Strand -
Gene summary Predicted to enable RNA binding activity and protein heterodimerization activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to act upstream of or within mRNA catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm2-8 complex; U2-type precatalytic spliceosome; and spliceosomal snRNP complex. Predicted to be active in P-body and nucleolus. Is expressed in brain and pancreas epithelium. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm6

Retroname Coord Strand Genomic Region ENSG
Lsm6P1 chr7:98104308-98104885 + Intragenic
Intragenic
 ENSMUSG00000108764 UCSC
Lsm6P2 chr8:23448052-23448642 - Intergenic
 ENSMUSG00000109793 UCSC
Lsm6P6 chr18:10145441-10146004 - Intragenic
 ENSMUSG00000058567 UCSC
Lsm6P4 chr12:105673446-105673621 + Intragenic
 N/A UCSC
Lsm6P5 chr12:84381053-84381437 - Intragenic
 N/A UCSC
Lsm6P3 chr11:78039849-78040334 - Intragenic
 ENSMUSG00000060727 UCSC

Expression

Transcript Sequences

>NM_001191004.1
CGCTGATTGGGTGAGATGGGAAAGCCGCTGCCGGGGGCGGTTTCGGTTTTCGGCGCGCGCGTCCGCGGAAGCCCGGCCTGTGAGCGTTCTGGATCCGGCTGCAAGATGAGCCTGGGGCCGTGACAGGTGAAATGGTGATGAGTTACGCAAGCTGCACAGATAATTAAGTAGCAGAGATTAGAACTCAGgtttcctgcctcccaaGGTTGTTAAACATGAGCCTGCGGAAGCAAACCCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTGTGGTGAAATTAAATTCTGGCGTGGATTATCGAGGGGTCCTGGCCTGCCTGGATGGCTACATGAATATAGCCCTGGAACAGACAGAGGAGTATGTAAATGGACAGCTGAAGAATAAGTACGGAGATGCGTTCATCCGAGGAAACAATGTGCTGTACATAAGTACACAGAAGAGGCGGATGTGAAGACACCAGGAGGCAGTGCTCTTCAGAGATGGATAGATGAAGTGGTTTTGGTTCTCTTACCATCTTAGTTGGCCTGTTTTCATGGTGGCTggtgggggtttgtttgtttgtttgtttaattgacaTTGGAATAAGATAGAGGTATTGCATTACAGATCGACTCTTAAGTTTTTCACATTTATGTCTCAGTCTTTATCATTTCTGCCTGTACAGAATGCTAAAACTAAAACAGTTTGTTTCTCCAGGATTATTTTACCTAAGATTCCTGCCCTGTCATTCCATTGGTTGATTACGTATTCAGCTGACTAAGTGGTACATCCCGGAACCTGTGATCAAGCATTCTGGAGGCatcctttgtctctttctctactCACCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGACAAGAGGTCAGAAAATCAGCTGTTTATTTAGTCACCTAGTTAGTGGTGGTATCTCCACAAAGGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTCAGCCACGTGAGGTGAGACACTGCCTGGAAGCCTCCTGTGCAGTTAGACTCTTCATGTTAACTTGCTCCCTGTTGAGAGTGTTGGTGCAATGGCTGGTTACGCCAGCCAGGGGAGGAGCTCTACTGTTCCTGAGAAACTGGCTGTGGCTGAGGTGGTGCAAGCCCAGAGTGCTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTGCGAAAGTTTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGActgtgtgtgggtgctttggttgCATGGACGCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGTCGGACAGTTTTAGAGCAATTGCCCGGCtggaggaagtggaggcagatgGACAGCTAAGGAGGGAGGGTGTGCTTTCTGGAGAGGTGTATATATGGCATTTGTCTAATTTAAATAGTAATCAGAAACAATTAATAACTCAGGAAAGAGAGGAGTAAGGTTTGATGGTGTGCACactgaaaataaaacactttATCCTAAGCTTCAGTAATTCATCACTTCCTGACAGGGGCTTGCAAAGGCACCAGTGTGTAAGTACAAATCACCAATTTGCTCTTTTATAAATGGCTTctttaaaggagaaaatggatGTCTCTCGGAGTGGAGCACACATGTTCTCATTTGTTTTTTAGAGTGTGTGAGGCCGCCAGGTTACTGCATCCCTTCATTCATCCCCTCAGCTGCCCTGAAAGCAGCCCTGCTGTTATCTCCAGCAGTCTGTAACATCCCGGCTCTGCTCATTTCTTCCCTGACCTCCCCTCCAGCCTGCAGGTCTTTATTTCCCTCTTGCCATTTCTAGCTTAATAGCGCTACTGCAGAATATTGTTTTCATCCATGGAACCGCTTTTAATCAAGATGGACTTTGGGAAATGCTACCATTTTTATGGTAATAACCATATTATGCATCTGGACCAGCACATGTTGTCCCCTGTGCATACCTTCTTGTGATAGAATTCTGAAACAAATTGTAAATggtaaaattactttttttttaactgtagtcTCCTCGTGGTCTGTGAATGGTTTTCAGTTGGATGGTAGCAAAGACAATTGTTGTAGGGTGAAAATTTTTCACTTGAGTAAATACATTTTCCGTGTCCCTATGCCCCCAACCACAGTTGCCACCATCTTTCTCTTGGGCCGTGACAAAACAGAATGTCTAGCAGGAAACAGAACTTGTGCTTGCTTTCCAGACTATCTGCCTTCATATTTTGTTTTGGTCTGTGAGCTATTCCTTGGCTAATCTTGCAGACTGAATCAATTCTTACTTCAAAAGTGTTTATCCCAAACAGAGCTGTAGACGAGTACAAATACAGATGGCGGCCATGTGGTCTGAACCATGTTCCCCCTCAGCCTGCAGACAGGGTTCACATCTTGAGCATCATGTTTGAGGCCATATGTAATGCATGCGAGGAGTTCCTAATGATGTGACAGATAGTAACAAATGCTTAAGGGATTTCCTCAAGGTTGGAAACAGCAGCATCGACTTAAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCACTGTGGGAAAACTGTCTTTGATATTCACAGTGCCTCTTGGATGACAGCATTCCAGGCCAAGGAGCCAGTCTGTCCCTCAGTGCAGATTAGCATACATGCCCGTCTTTACAGTGACTTTTGGTTTAAGAGAAAATGGTGTAttggcttgttcctcttgtgggaAGATCTCAACCTTGGAGTTCTCATAGCCAATCTATGCTTGTCacgttttatttgtttttcctgcCCCAAAACAAATTATTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGCTCCACAGCAGCTACCTGTTCTAATCAGCTGGCTTCTGAGAGTACACGGCTAGGTGTGCTCTGATCTGAATAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTTGGCCAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTTGCCTAAAGGACAGGGTGGACAGTATGCACCTCTTATGTAATAGGGCAAGAGACAGCCTCAAGTGATGCTTGCTTATTGTCTTAgttgttactgctgtgaacagacaccacgaccaaggcaactcttataaggaccacatttaactggggccggcttacaggttcagagattcagttcattatcatcaaggcaggaacatggcagcatccaggcaggcatggtgcaggaggagctgagagatctacatcttcatctgcaggccactaggagaagactggcttccaggcagctaggacaagctAAAGCCCACGCCTCAGCGACACATGTCCAAAgaagtgccactctctgggccaaaattcaagccaccacacttaCTTTCTTGAAAAGTTAGAGGAGCTAACTAGGGAGGGGAGTTGGAAGAAATGATGTTGATGATCAGCGCCCACTGAATGGCAGCTGTGGACAGGATCTATGTGGTACCCTAAATGAATAAGTGAGATACTACCCCCTGTGCACGATAGGAAGTCACTTGCAAGTCTGGCTATTTATAGGAGAAAGTACCTGACACTGTCTTTTTAGATGGGACAGGATTTTAAAATAGTTCATAAATGCATTTGATGTCTCAGCTATGTTCATACCTTAAAATTTCAGATAAACTTGGAACTGGAAAACCTTG
>NM_030145.3
CGCTGATTGGGTGAGATGGGAAAGCCGCTGCCGGGGGCGGTTTCGGTTTTCGGCGCGCGCGTCCGCGGAAGCCCGGCCTGTGAGCGTTCTGGATCCGGCTGCAAGGGTTGTTAAACATGAGCCTGCGGAAGCAAACCCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTGTGGTGAAATTAAATTCTGGCGTGGATTATCGAGGGGTCCTGGCCTGCCTGGATGGCTACATGAATATAGCCCTGGAACAGACAGAGGAGTATGTAAATGGACAGCTGAAGAATAAGTACGGAGATGCGTTCATCCGAGGAAACAATGTGCTGTACATAAGTACACAGAAGAGGCGGATGTGAAGACACCAGGAGGCAGTGCTCTTCAGAGATGGATAGATGAAGTGGTTTTGGTTCTCTTACCATCTTAGTTGGCCTGTTTTCATGGTGGCTggtgggggtttgtttgtttgtttgtttaattgacaTTGGAATAAGATAGAGGTATTGCATTACAGATCGACTCTTAAGTTTTTCACATTTATGTCTCAGTCTTTATCATTTCTGCCTGTACAGAATGCTAAAACTAAAACAGTTTGTTTCTCCAGGATTATTTTACCTAAGATTCCTGCCCTGTCATTCCATTGGTTGATTACGTATTCAGCTGACTAAGTGGTACATCCCGGAACCTGTGATCAAGCATTCTGGAGGCatcctttgtctctttctctactCACCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGACAAGAGGTCAGAAAATCAGCTGTTTATTTAGTCACCTAGTTAGTGGTGGTATCTCCACAAAGGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTCAGCCACGTGAGGTGAGACACTGCCTGGAAGCCTCCTGTGCAGTTAGACTCTTCATGTTAACTTGCTCCCTGTTGAGAGTGTTGGTGCAATGGCTGGTTACGCCAGCCAGGGGAGGAGCTCTACTGTTCCTGAGAAACTGGCTGTGGCTGAGGTGGTGCAAGCCCAGAGTGCTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTGCGAAAGTTTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGActgtgtgtgggtgctttggttgCATGGACGCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGTCGGACAGTTTTAGAGCAATTGCCCGGCtggaggaagtggaggcagatgGACAGCTAAGGAGGGAGGGTGTGCTTTCTGGAGAGGTGTATATATGGCATTTGTCTAATTTAAATAGTAATCAGAAACAATTAATAACTCAGGAAAGAGAGGAGTAAGGTTTGATGGTGTGCACactgaaaataaaacactttATCCTAAGCTTCAGTAATTCATCACTTCCTGACAGGGGCTTGCAAAGGCACCAGTGTGTAAGTACAAATCACCAATTTGCTCTTTTATAAATGGCTTctttaaaggagaaaatggatGTCTCTCGGAGTGGAGCACACATGTTCTCATTTGTTTTTTAGAGTGTGTGAGGCCGCCAGGTTACTGCATCCCTTCATTCATCCCCTCAGCTGCCCTGAAAGCAGCCCTGCTGTTATCTCCAGCAGTCTGTAACATCCCGGCTCTGCTCATTTCTTCCCTGACCTCCCCTCCAGCCTGCAGGTCTTTATTTCCCTCTTGCCATTTCTAGCTTAATAGCGCTACTGCAGAATATTGTTTTCATCCATGGAACCGCTTTTAATCAAGATGGACTTTGGGAAATGCTACCATTTTTATGGTAATAACCATATTATGCATCTGGACCAGCACATGTTGTCCCCTGTGCATACCTTCTTGTGATAGAATTCTGAAACAAATTGTAAATggtaaaattactttttttttaactgtagtcTCCTCGTGGTCTGTGAATGGTTTTCAGTTGGATGGTAGCAAAGACAATTGTTGTAGGGTGAAAATTTTTCACTTGAGTAAATACATTTTCCGTGTCCCTATGCCCCCAACCACAGTTGCCACCATCTTTCTCTTGGGCCGTGACAAAACAGAATGTCTAGCAGGAAACAGAACTTGTGCTTGCTTTCCAGACTATCTGCCTTCATATTTTGTTTTGGTCTGTGAGCTATTCCTTGGCTAATCTTGCAGACTGAATCAATTCTTACTTCAAAAGTGTTTATCCCAAACAGAGCTGTAGACGAGTACAAATACAGATGGCGGCCATGTGGTCTGAACCATGTTCCCCCTCAGCCTGCAGACAGGGTTCACATCTTGAGCATCATGTTTGAGGCCATATGTAATGCATGCGAGGAGTTCCTAATGATGTGACAGATAGTAACAAATGCTTAAGGGATTTCCTCAAGGTTGGAAACAGCAGCATCGACTTAAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCACTGTGGGAAAACTGTCTTTGATATTCACAGTGCCTCTTGGATGACAGCATTCCAGGCCAAGGAGCCAGTCTGTCCCTCAGTGCAGATTAGCATACATGCCCGTCTTTACAGTGACTTTTGGTTTAAGAGAAAATGGTGTAttggcttgttcctcttgtgggaAGATCTCAACCTTGGAGTTCTCATAGCCAATCTATGCTTGTCacgttttatttgtttttcctgcCCCAAAACAAATTATTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGCTCCACAGCAGCTACCTGTTCTAATCAGCTGGCTTCTGAGAGTACACGGCTAGGTGTGCTCTGATCTGAATAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTTGGCCAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTTGCCTAAAGGACAGGGTGGACAGTATGCACCTCTTATGTAATAGGGCAAGAGACAGCCTCAAGTGATGCTTGCTTATTGTCTTAgttgttactgctgtgaacagacaccacgaccaaggcaactcttataaggaccacatttaactggggccggcttacaggttcagagattcagttcattatcatcaaggcaggaacatggcagcatccaggcaggcatggtgcaggaggagctgagagatctacatcttcatctgcaggccactaggagaagactggcttccaggcagctaggacaagctAAAGCCCACGCCTCAGCGACACATGTCCAAAgaagtgccactctctgggccaaaattcaagccaccacacttaCTTTCTTGAAAAGTTAGAGGAGCTAACTAGGGAGGGGAGTTGGAAGAAATGATGTTGATGATCAGCGCCCACTGAATGGCAGCTGTGGACAGGATCTATGTGGTACCCTAAATGAATAAGTGAGATACTACCCCCTGTGCACGATAGGAAGTCACTTGCAAGTCTGGCTATTTATAGGAGAAAGTACCTGACACTGTCTTTTTAGATGGGACAGGATTTTAAAATAGTTCATAAATGCATTTGATGTCTCAGCTATGTTCATACCTTAAAATTTCAGATAAACTTGGAACTGGAAAACCTTG