Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name CALM2
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name calmodulin 2
Also known as CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM
Coordinate chr2:47160082-47176936
Strand -
Gene summary This gene is a member of the calmodulin gene family. There are three distinct calmodulin genes dispersed throughout the genome that encode the identical protein, but differ at the nucleotide level. Calmodulin is a calcium binding protein that plays a role in signaling pathways, cell cycle progression and proliferation. Several infants with severe forms of long-QT syndrome (LQTS) who displayed life-threatening ventricular arrhythmias together with delayed neurodevelopment and epilepsy were found to have mutations in either this gene or another member of the calmodulin gene family (PMID:23388215). Mutations in this gene have also been identified in patients with less severe forms of LQTS (PMID:24917665), while mutations in another calmodulin gene family member have been associated with catecholaminergic polymorphic ventricular tachycardia (CPVT)(PMID:23040497), a rare disorder thought to be the cause of a significant fraction of sudden cardiac deaths in young individuals. Pseudogenes of this gene are found on chromosomes 10, 13, and 17. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2015]

Retrocopy(s) from CALM2

Retroname Coord Strand Genomic Region ENSG
CALM2P5 chr11:50081260-50081452 + Intergenic
N/A UCSC
CALM2P2 chr10:70163630-70164741 + Intragenic
ENSG00000229097 UCSC
CALM2P3 chr13:41170587-41171202 - Intergenic
ENSG00000215482 UCSC
CALM2P4 chr13:98640812-98641307 - Intergenic
ENSG00000233662 UCSC
CALM2P1 chr17:70241268-70242378 + Intergenic
ENSG00000267170 UCSC

Expression

Transcript Sequences

>NM_001305626.1
AGATTGCTCATGTAACTCTTGAGTTTACATGTAATCAACATATGCTCATTGAAAACGGGATTGCTTCAAGAGGACTTTGAGTGCAGGGTGATTAGGTAAGTAAAAGATGTAAAAAGGTAGAAAATTTTTGTCACTTGAGTCTAAATAATTGTTCTTATAAGTGCCAACGCCTGTTTCTGTTAGGCTCAGAAGATCAAAGGATTTGGCTCTTTTAAAATATAGAAAGCTCTAGCTTCAGCTAGAATTTAGGCCTTTAGTAATAGCCCTAATTTTTATGAAGCCATTTTGTTCCAGTGATCTTTTGGTGAGAGATGCTATGTAAGTACTATTCTTCAGAATTAGGTGTCTTTTTACCCTAATGAAATAATTTAGATTGCTTTTGATACAGGTAAAACAAATATCCTGGCTTCCATAATTGTAGAAAAAACTTCATATAGGAATCCTTGTTGTATCAAAGTAGCACCTGATGGGAATGAACAGACAGGAATGGATGAAGGATAGCAGTTTGCGTTCCATTTCAAGCCTATGGGCTCACACATTTATTCAGATAAGAACACCACCTTTCACTAGATAAACTCCAACAGTATTCATGCATACTTTTGAATGGCATGTAGGAAATGTTTGATAGGTACATAATGTATTCACTTCAGGTCACTAATGTAATACGGGGTCGTGCTCCTTAGTGTTGacagatcacctatggttctccaaaatgaacattctagtacaggaggtctagggaggaacctgagaGTATACTAATGCCTAGGAACTTTCTCTGGAGTGGCAAGAGCAGTGGGAAGAATTATGTCAATAGCTACAGAAATAAGGGAGTAAGAACAAGTCATCTCTCTAGTGAATTCTTCTTCACTTTACTGAGATAAACATACATGTTAATGAGCTTGAGTTTTCCCAAAAGTATAATTCTTCTGGTTCTTCTAAGAAAATGGCACTCCCTGGAAACAAGGAAGAACCAAATTTATTCGCCTTTGTAGCAGTTGGGAAAGTTAGTGCTAGGAAGTCTTCTTGATTTATAGTAGGCTTTAATCTGGATATTGCTGGTAAAAGTTTATTCTAAAACCTGAACTCTGGATAAGTAATACAAAAAGCTTCTCAACCTTCCAAGCAAAATTGAGAGCTTTCAGGTTATGTGAGTAATTTGGTCTCTTGGGTGCTTAATTCATTCCTTGAAGCTCATTTTTGTGATCTCTTCCAAGATTGCATTTGCTTGGAGGTAGGGAGTTAGACAAGATGGTATGAGGTCCCTAAATTTTGACTTTCCAAGCAAAATTGGACAGTGGTTCCTAAATTGCTAACATCCTCGTTTCTTCCTAAGGCTTCTCATGTTTCATATATAGTAGCCTTCCCAAAGTCCCATTTcccaccccccccccccccccAACCCATGTAGAGAGAACGAACCTGTCTCCCTTCCTGTACAGAGTACGGGATCCTTCAACTTTCACACAGGCTGCAGTGTCTGCCACACATTTAGCTCAACTTTTTTTTAGCCTTAAAGTGATGTCCGCTGCATCTGTCGCTGGGTTGCACCTTGTGGATTTAGTTTGCATAAATTTTCTCAGCTTAAACAAAGTTAACATTGAATAGAGTAAGCTTACCATAAAGGGCTTAATAAATGCCATGCATGTCTACATTCGGTGTGGAAATTGAGCTAGTCAGGTTGATATTTAACATTGTAGGTTCTTTGTTAATTTATATGAAATAATGGTTATCATTTAACTCTTTAGGTTAgctttgtacatagcatctcactttgcacaacaaccctgcaaggtaagtattgttattcttgtgctacaaatgaagttgactgagaggaggagtaccacgtccaaggtcacacagctattaaatggcagggctgggatactggcctgtgactcagaacttgatgctttccccccacgccacgcatgccAGGTTGCCCTTCCTTTCAGAAATGGTGGAAGTCCTGCAAAATGCAATAAACTGAAGTAATGTAGCTTCTATTAATACAAAGTAAATAACTCAGATTTACTGGATTTTAAACCTTATTCCTTGGGTAAACAATCTGTGACTGACTTCACACCAAATATTTGTTGGCGGAGGATTTGGACTTTAGGGATAAAAGTGGATACATTTTTTATTTTACAAACTCTGTATTTGAACTTAATTATTGGCTCTTCAATTTTACGTTACCAGCttttttttttttttttttttttAATGAATTTGATTTACATCATGGTCAAACAAAAATTGTTGAGCAGGGAAAATAAACTGCTTTCTGGATTCCTTCTTGAATTTTCTCATGTGCCCTAGAGAAAATGTGTTCCACATTAAGGTGTTACTTTTTCCAGGGGTGTGTTCATTTAAAAAGAATGAAGCCAGGCAATGTTTATTTTTCTTTTACCTATAAATAAATGAATGGATTAATCATTGTATACTTGACTCCCATGTTGGTAGGGATTTTAGATAGGAGGCTATTTCTTGTCTGTGCTTCTCAATACCCCATAAGCAGTTGCTTCATGGATGTATATACTAATAAGCAGTGAAAGAAAGTGCATGTTCAAAGAATACAACAAGGAGTCTGGATATTTTGCAATCATCTTTATATATTACGGTGCTCTGAATTAAAAGCTAAAAGTTACTGGGTATGTCTGACACCTTAGTGCTTTATCTTTGTTCTACTAATTTTCTGTGCCCCAATCCcacttaaccctagcctcattccttatctgtaagataggggataataccactgtaaggttattattaagattgaataaggataaaatttataatgggttttagcaAATGGCAGAAAATATTTTCTGAAGAAAACCAAGTGCTATTAAAAAAACATCACAAGCCTTGGGCTTACTTTGGGATTTTAAAAACCAAGAGAAAATGGATGGCTGAACTTTCAAACATTTGGTAAATATTATAGTACTGTAGTTCAGAGCTCTGGATTCTTTGCATTTTGCCTGCTGGGTGAGAAGGAATAAAAGTTTGTGCCTTTTTTTTTTTTTAATCACTTTAATTTCAAAACAATGTGTTTAACCATTTGTGGGAGTAATTTTCATTTTGTGAGCCTGAAGCATTTTGATTCAGTGGGAATTTCTGGTGATTTATATCTGGAATAGAAGTGAGCTTAAGTTTAGCTATTCTAACGTTGAAAAAGGAAGCAATGTTTCTATTGGATTCTAAAGTATATTTTCAAAAATATTCTGAAGTATTTGTATATCTTAAACTTGGAGTTAAGACAGCTTAGCTTTGAAGATAAGAGAAACTAGATGTGTGCATTTTCTATCCAGATGTGTTTGTTGCTGGAACTAAATGAAACAGTACATGGTAACCCTTGAAAGGTTTTAAACTTGTTTCTGTAACTGCTAATCTACATACTCTCAAGTCACTAACCTTCCTCTTTGATCTCTTTGTAGGCTGACCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCTGCAGAACTTCGCCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAAGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTGATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACCTTGTACAGAATGTGTTAAATTTCTTGTACAAAATTGTTTATTTGCCTTTTCTTTGTTTGTAACTTATCTGTAAAAGGTTTCTCCCTACTGTCAAAAAAATATGCATGTATAGTAATTAGGACTTCATTCCTCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCCTAAAACCTTATTTTAGAAAATTGATCAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTAAACTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGCCTTTTTTAAAGTAGTTTTCTTTAGGAACTGTCAGCATGTTGTTGTTGAAGTGTGGAGTTGTAACTCTGCGTGGACTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTATTATCCAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTATTGTTACTTGCTTTTTAAACTTTGTTTAGCCACTTAAAATCTGCTTATGGCACAATTTGCCTCAAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAATTACAATTTACCCAATGGTTGCTCTGCATCTGAGTCATTTAACTGTTGAAGTCTAATAATTTTGAAAATAAAATATGGCATTGGTTTCTGCTTGGTA
>NM_001743.6
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCTCGGAAACCGGTAGCGCTTGCAGCATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCTGCAGAACTTCGCCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAAGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTGATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACCTTGTACAGAATGTGTTAAATTTCTTGTACAAAATTGTTTATTTGCCTTTTCTTTGTTTGTAACTTATCTGTAAAAGGTTTCTCCCTACTGTCAAAAAAATATGCATGTATAGTAATTAGGACTTCATTCCTCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCCTAAAACCTTATTTTAGAAAATTGATCAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTAAACTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGCCTTTTTTAAAGTAGTTTTCTTTAGGAACTGTCAGCATGTTGTTGTTGAAGTGTGGAGTTGTAACTCTGCGTGGACTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTATTATCCAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTATTGTTACTTGCTTTTTAAACTTTGTTTAGCCACTTAAAATCTGCTTATGGCACAATTTGCCTCAAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAATTACAATTTACCCAATGGTTGCTCTGCATCTGAGTCATTTAACTGTTGAAGTCTAATAATTTTGAAAATAAAATATGGCATTGGTTTCTGCTTGG