Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name MAP1LC3B
Plot displaying the genomic locations of a parental gene (in chr16) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name microtubule associated protein 1 light chain 3 beta
Also known as ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a
Coordinate chr16:87392336-87404774
Strand +
Gene summary The product of this gene is a subunit of neuronal microtubule-associated MAP1A and MAP1B proteins, which are involved in microtubule assembly and important for neurogenesis. Studies on the rat homolog implicate a role for this gene in autophagy, a process that involves the bulk degradation of cytoplasmic component. [provided by RefSeq, Jul 2008]

Retrocopy(s) from MAP1LC3B

Retroname Coord Strand Genomic Region ENSG
GS1-279B7.1 chr1:185333041-185333272 - Intergenic
 ENSG00000261024 UCSC
MAP1LC3BP4 chr12:114549578-114550055 + Intergenic
 ENSG00000255830 UCSC
MAP1LC3BP5 chr12:116575855-116576593 + Intergenic
 N/A UCSC
MAP1LC3BP3 chr12:74663501-74664198 - Intergenic
 ENSG00000188646 UCSC
MAP1LC3BP6 chr15:32836703-32837342 - Intragenic
 ENSG00000259392 UCSC
MAP1LC3P chr18:54954412-54954590 + Intragenic
 ENSG00000267647 UCSC
MAP1LC3BP2 chr7:7293527-7293875 + Intergenic
 ENSG00000236712 UCSC
MAP1LC3BP1 chr9:19459231-19461369 - Intergenic
 ENSG00000231909 UCSC
MAP1LC3BP7 chrX:27741443-27743017 + Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_022818.5
AGAGTCGGATTcgccgccgcagcagccgccgcccccgggagccgccgggaccctcgcgtcgtcgccgccgccgccgccCAGATCCCTGCACCATGCCGTCGGAGAAGACCTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTCGAGAGCAGCATCCAACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTTCTGGATAAAACAAAGTTCCTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGCTTACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACACCAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGGATTCCTGTACATGGTCTATGCCTCCCAGGAGACGTTCGGGATGAAATTGTCAGTGTAAAACCAGAAAAAATGCAGCTCTTCTAGAATTGTTTAAACCCTTACCAAGGAAAAAAAAGGGATGTTACCAACTGAGATCGATCAGTTCATCCAATCACAGATCATGAAACAGTAGTGTTCCCACCTAGGAGTGTTAGGAAGTTGTGTTTGTGTTTCAAGCAGAAAAACTGAGCTCCAAGTGAGCACATTCAGCTTTGGAAACTATATTATTTAATGTAGGCTAGCTTGTTTTCAAATTTTAAAAGTTTAAAAATAAAATACTTTGCATTCTAAGTTGCCAATAAAATAGACCTTCAAGTTATTTTAATGCTCTTTTCTCACTAATAGGAACTTGTAATTCCAGCAGTAATTTAAAGGCTTTCAGAGAGACCCTGAGTCTTCTCTTCAGGTTCACAAAACCCGCCGCCTTTTTGGGTAGAAGTTTTCTACTCAGCTAGAGAGATCTCCCTAAGAGGATCTTTAGGCCTGAGTTGTGAAGCGCAACCCCCGCAAAACGCATTTGCCATCACAGTTGGCACAAACGCAGGGTAAACGGGCTGTGTGAGAAAACGGCCCTGACTGTAAACTGCTGAAGGTCCCTGACTCCTAAGAGAACCACACCCAAAGTCCTCACTCTTGCAGGGGTAGACATTTCTGGTTTGGTTTGTTCTCTAGATAGTTACACACATAAAGACACCACTCAAAAGGAAACTTGAATAATTTATAATTTTGATCGAGTTTCTTAAAAGACCCTGGAGAAAGAGTGGCATTTCTTCTGTTTCAGGTTTTGTCTGAGTTCAAACTAGTGCCTGTGTTGTTACGGAAAGCAGCAGTGTACCAGTGTCACTCTGGAGTACAGCGGGAGAAACACAAAATAGTATAACTGAAAACATTAACATTCAGACACACTCCCTTCTGCCTTCCGGCTTAAAGCTGTGGATGATCCACGTTTTTGTTTTTTTAATGTTAAATGTGTAACTCAGTATTACTGAAAAGGTACCCACATTTTGAATAGTAGTTATCACTCTTAGGTCAGACAGCCATCAGAATTCTCCCACACCAAGTGCATGTCAGTTGTGGAGAAAACATAGCAAAAAGAGCCGTACGCTCTTTACAGATACTAATGTCAAGAGTTAAACCTCCTCAGGTTCAACCTGTGATAAAAGACTAGTGCTTCCCAGTACTTGCATGGGGTTCACTATTTATAGTTTTCTTGGGAGTATCACAGGAAAATCACAATTACACCACTTTAGACCCTATGTGTAGCAGGTCACAACTTACCCTTGTGTGTTTAGATGTGTATGAAATACCTGTATACGTTAGTGAAAGCTGTTTACTGTAACGGGGAAAACCAGATTCTTTGCATCTGGGCCCTCTACTGATTGTTAAAGGAGTTCCTGTCACCTGCTCCCCCCACCCCCGCATGCGTCTGTCCACTTGGCTAACTTTTAATATGTGTATTTTTACATTATGTATATTCTTAACTGGACTGTCTCGTTTAGACTGTATACATCATATCTGACATTATTGTAACTACCGTGTGATCAGTAAGATTCCTGTAAGAAATACTGCTTTTTAAGAAAAAAAATAACATGCTGAGGGGTGACCTATATCCCATGTGAGTGGTCACTTTATTTATAGGATCTTTAAAACATTTTTAATGAACTAAGTTGAATAAAGGCACAATTAAAAACTGTCA