Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps21
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ribosomal protein S21
Also known as -
Coordinate chr3:175629176-175630198
Strand +
Gene summary Predicted to enable ribosome binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps21

Retroname Coord Strand Genomic Region ENSG
Rps21P1 chr1:205161476-205161782 + Intergenic
N/A UCSC
Rps21P2 chr1:273981054-273981325 + Intergenic
N/A UCSC
Rps21P3 chr1:67423005-67423317 + Intergenic
N/A UCSC
Rps21P4 chr2:128544873-128545135 - Intragenic
N/A UCSC
Rps21P5 chr2:129513069-129513409 - Intergenic
N/A UCSC
Rps21P6 chr2:133607209-133607549 - Intergenic
N/A UCSC
Rps21P7 chr5:159606646-159606990 + Intergenic
N/A UCSC
Rps21P8 chr6:134760881-134761160 + Intergenic
N/A UCSC
Rps21P9 chr6:34015949-34016271 + Intergenic
N/A UCSC
Rps21P10 chr7:18041560-18041873 - Intergenic
N/A UCSC
Rps21P11 chr7:34614104-34614427 - Intragenic
N/A UCSC
Rps21P12 chr8:50604724-50604961 + Intragenic
N/A UCSC
Rps21P13 chr8:70514138-70514908 - Intergenic
N/A UCSC
Rps21P14 chr9:11117510-11117848 + Intergenic
N/A UCSC
Rps21P15 chr9:81338323-81338649 + Intragenic
N/A UCSC
Rps21P16 chr17:11940523-11940764 + Intergenic
N/A UCSC
Rps21P17 chrX:77298916-77299261 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_031111.1
TTTCTGTGTTCTCCGTAGACCCGTGAGCAGGGACGGCCTCGGTATGCAGAACGACGCCGGCGAGTTTGTGGACCTGTACGTGCCGCGGAAATGCTCCGCGAGCAACCGCATCATTGCTGCCAAGGACCACGCGTCCATCCAGATGAATGTGGCCGAGGTTGACAGGAGTACAGGCCGATTTAATGGTCAGTTTAAAACCTACGGCATCTGCGGGGCCATTCGCAGGATGGGCGAGTCAGATGATTCTATTCTCCGATTGGCTAAGGCTGATGGAATTGTCTCAAAGAACTTTTGAGCCAGAAGAAATCGGGAATAATTTGTTATAAATAAAAGTGATAATAAGTA