Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Sf3b1
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name splicing factor 3b, subunit 1
Also known as 155kDa|2810001M05Rik|Prp10|SAP155|SF3b155|TA-8|Targ4
Coordinate chr1:55024328-55066638
Strand -
Gene summary Enables chromatin binding activity. Acts upstream of or within anterior/posterior pattern specification; blastocyst formation; and mRNA splicing, via spliceosome. Located in chromatin and nuclear matrix. Part of U2 snRNP. Is expressed in several structures, including central nervous system; endocrine gland; genitourinary system; hemolymphoid system gland; and sensory organ. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and myelodysplastic syndrome. Orthologous to human SF3B1 (splicing factor 3b subunit 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sf3b1

Retroname Coord Strand Genomic Region ENSG
Sf3b1P1 chr13:109388287-109388916 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_031179.2
GTGCGGCGCGCGCTCCCGGGTGCGCACGCTCAGAGAGCGGCCTCTGTTTCTGGCGGCGGCGAGCGGAAGTCCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACAAAATGGCGAAGATCGCCAAGACTCACGAAGatATCGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCCCAAGGAGTGGGCCTTGATTCCACAGGTTATTATGACCAAGAAATTTATGGTGGAAGTGATAGCAGATTTGCTGGATATGTGACATCAATTGCTGCAACTGAACTTGAAGATGATGACGATGACTACTCATCATCCACGAGCTTGCTCGGTCAGAAGAAGCCTGGATATCATGCCCCCGTGGCGTTGCTTAATGATATACCACAGTCAACAGAGCAGTATGATCCATTTGCTGAGCATCGTCCTCCAAAGATTGCCGATCGGGAAGATGAATACAAAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAGACTCCCGATCCTAAAATGAATGCTAGAACCTACATGGATGTTATGCGAGAACAACATTTGACTAAGGAAGAGAGAGAAATTAGGCAACAACTAGCAGAAAAAGCTAAAGCTGGAGAACTAAAAGTCGTCAATGGAGCAGCAGCATCCCAGCCTCCCTCAAAACGAAAACGGCGCTGGGATCAGACCGCTGACCAGACTCCTGGTGCCACTCCCAAAAAGCTATCGAGTTGGGATCAGGCAGAgACCCCTGGGCATACCCCATCTTTAAGATGGGATGAGACACCGGGTCGTGCAAAAGGAAGTGAAACACCTGGCGCAACCCCAGGCTCAAAAATATGGGACCCTACACCGAGTCATACACCTGCGGGAGCTGCTACTCCTGGGCGAGGCGACACACCAGGCCATGCAACCCCGGGCCATGGTGGTGCAACTTCCAGTGCTCGTAAAAACAGATGGGATGAGACCCCCAAAACAGAAAGAGATACTCCTGGGCATGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAGGTGGAGACTCTATTGGTGAAACACCAACTCCTGGAGCAAGTAAAAGAAAGTCTCGTTGGGATGAAACGCCGGCGAGTCAAATGGGTGGAAGCACTCCTGTTCTGACTCCAGGAAAAACACCAATTGGCACACCAGCCATGAACATGGCTACCCCGACTCCAGGTCACATAATGAGCATGACACCTGAACAGCTTCAGGCGTGGCGGTGGGAGAGAGAAATTGATGAACGAAACCGCCCACTTTCTGATGAAGAATTAGATGCTATGTTCCCAGAAGGATATAAGGTACTTCCCCCTCCAGCTGGTTATGTTCCTATTCGAACTCCAGCTCGAAAGCTGACAGCAACTCCTACACCTTTGGGTGGTATGACTGGTTTCCACATGCAAACTGAAGACAGAACTATGAAAAGTGTCAATGACCAGCCATCTGGGAATCTTCCATTTTTAAAACCTGATGACATTCAGTACTTTGATAAACTATTGGTTGATGTAGATGaatcaacacttagtccagaagaacaaaaagaaagaaaaataatgaagttgcttttaaaaattaagaatggtACACCTCCAATGAGAAAGGCTGCCTTACGTCAGATTACTGATAAAGCTCGAGAATTTGGAGCTGGACCACTGTTTAACCAGATTCTTCCTCTGTTGATGTCCCCTACACTTGAGGATCAAGAGCGACATTTACTTGTGAAAGTTATTGATAGAATATTGTATAAACTTGATGACTTGGTGCGGCCGTATGTGCACAAGatTCTTGTGGTTATCGAGCCACTGTTGATTGATGAAGATTACTATGCTAGAGTGGAAGGCCGAGAGATTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATTTCTACCATGAGACCTGATATAGATAACATGGATGAATATGTCCGAAACACAACAGCTAGAGCTTTTGCTGTCGTAGCCTCTGCCCTGGGCATCCCTTCTTTATTGCCTTTCTTAAAAGCTGTGTGCAAAAGCAAGAAGTCTTGGCAAGCGAGGCACACTGGTATTAAGATTGTACAACAGATAGCCATTCTCATGGGCTGTGCTATCTTGCCACATCTCAGAAGTTTGGTTGAAATCATTGAACATGGTCTCGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGCTCTGGCCATTGCTGCTTTGGCTGAGGCAGCAACTCCTTATGGTATTGAGTCTTTTGATTCTGTGCTCAAGCCCCTATGGAAGGGTATCCGCCAACACAGAGGAAAGggtcTGGCTGCTTTCTTGAAGGCTATTGGGTATCTTATTCCTCTTATGGATGCAGAATATGCCAACTACTATACTAGAGAAGTGATGTTAATCCTCATTCGAGAATTTCAGTCTCCtgatgaagaaatgaagaaaattgttTTGAAGGTGGTGAAACAGTGTTGTGGAACTGATGGTGTAGAAGCAAACTACATTAAAACAGAGATTCTTCCACCTTTCTTTAAACACTTTTGGCAACACAGAATGGCTTTGGATAGAAGAAATTACCGACAGttagtTGATACAACTGTGGAGTTGGCAAACAAAGTAGGTGCAGCAGAGATCATATCTAGGATTGTTGATGATCTGAAGGATGAAGCTGAGCAGTACAGGAAAATGGTGATGGAAACAATTGAGAAAATTATGGGTAATCTAGGCGCAGCAGATATTGACCATAAACTTGAGGAACAACTGATTGATGGTATTCTCTATGCTTTCCAAGAACAGACTACAGAGGATTCAGTAATGTTGAATGGCTTTGGCACAGTAGTTAATGCTCTTGGCAAACGAGTCAAACCATACTTGCCTCAGATCTGTGGTACAGTTTTATGGCGTTTAAATAACAAATCAGCAAAAGTTAGGCAACAAGCAGCTGACTTGATTTCTCGAACTGCTGTTGTTATGAAGACTTGTCAAGAGGAAAAACTGATGGGGCACTTGGGTGTGGTGCTGTATGAATATTTGGGTGAAGAGTACCCTGAAGTATTGGGCAGCATTCTTGGAGCACTGAAGGCTATTGTAAACGTAATAGGTATGCATAAGATGACACCACCAATTAAAGATCTCCTGCCTAGACTCACCCCCATTTTAAAGAACAGACATGAAAAAGTACAAGAGAATTGTATTGATCTTGTTGGACGCATTGCTGACAGgggAGCTGAATATGTATCTGcaagagaatggatgaggatttgctTTGAGCTTTTAGAGCTCTTAAAAGCTCACAAAAAAGCTATTCGAAGAGCTACCGTCAATACATTTGGTTATATCGCAAAGGCTATTGGccCTCATGATGTATTGGCTACACTTTTAAACAACCTCAAAGTTCAGGAAAGGCAGAACAGGGTTTGTACGACTGTAGCCATAGCCATTGTTGCTGAAACATGCTCCCCCTTCACAGTACTGCCTGCCTTAATGAATGAATACAGAGTTCCTGAACTTAATGTGCAAAATGGAGTGTTAAAATCACTCTCCTTCTTGTTTGAGTATATCGGCGAAATGGGGAAAGACTACATCTATGCTGTGACGCCTTTACTTGAGGATGCGTTAATGGACAGGGACCTTGTTCACAGACAGACAGCGAGTGCAGTGGTGCAGCACATGTCACTTGGTGTTTACGGATTTGGCTGTGAGGATTCTCTGAATCACTTACTGAACTATGTGTGGCCTAATGTGTTTGAGACATCTCCCCATGTAATCCAGGCAGTTATGGGAGCTCTGGAGGGCCTGAGGGTTGCTATTGGACCATGCAGAATGTTGCAGTATTGCTTACAGGGTCTGTTCCACCCAGCTCGGAAAGTCAGAGACGTATATTGGAAAATTTACAACTCCATCTACATTGGCTCCCAGGATGCTCTCATAGCACATTACCCACGAATCTACAATGACGATAAGAACACCTATATTCGTTACGAACTTGACTATATCttgtaactttgtgtctaatacAGCTGTTTCACACCTTAAACCTGCTTCAATCTGATGATATAAACTTGTAAAACATTGCCGATCAGTGTAGAGCTGGTCATAGTGGAGGGATAGAAATCCAGTAGCatgatttttaaataacttttgtttttttgatgttAAACAGTAAATGGCAGTAGTGACCAAGGACAGTGCTTATACACACTATACTGGAGGGATATCATTTTTTATTCATCTTTATGAAGATTTAGAATTCATTCCTTGTGTTTAAAGGGAATGTTTAATTGAGAAATAAACATTCGTGTACAAAATgctaatttgtgtgtgttttttgaatATGACTTGTAAAATGCAAAACTTTGGTAAAGTACTGGTTTGTGTAGAATAAGTGGATTAATTTCATCTTTTGTCACCTAGTTTATTATGGAACACAGCAGCACGCAAACTATATAGTGATGGCCTGTTTGTCAAAAGCCCATTGTTTTGTTGGTAATGAAGAGTAGCTTGGGGTGCCCCTCCCCTCAGTGTAGCATAACAGTTCCAGCACCATAGAAAAGTAGCACTCTGACTGAGCTGTCTTAAGTATTATTTTGTACTTACATAGCACCTTTCACCTTGATTTCTCAAAATGCTTTATGAGCAGACATGAAGGATATATTTTACTTCTTGTCCAACTTTGGCCTGTGCTTATAAAGTGGAGAAGCTGTCTGTAACTTAGAATAGTGTATTTCCTGTTGGGAGTGAGGCTATCTAAGAAATAATTATATAGTAGGACAGTCTTTGGGCTTTTGTGTGATGCCTCTAATCAGTTTATTTATAAGCAGCTATTGAACACCTGTTGAATGCTAGCCACTGTCTGTTGAAGAAGGGGCTTCGAAGGTGCACATGATCCGGCCTTTCATGTAACGGAAGGGTGGGCGCAGATCCTTAGGTACCAGGGTGCTGTGCAATGGAAGATGCAGAGATGCCTAGATTTGCTTAGCTTGTATGTAGCAGTCAGATACTGTATTGGCTTAAGTGTGAGCATAAGCCAAAATGCCGTTCAGTTTATGAAGAACAAGCATTAAGGggctattttaatgttttgggtCAACTAATGAAtcagcttttttttgttgttgtttattgttttttaattttatgccccaaatttcttgtttttaaaacttttctagCCATCACTGTTTTGTCTCCCTCTGTACTTGTGTGGACtctaaaaggaaataaattctgCCATCAGTGTGACTGGCATGTGACTCTACCACCCTCAGACTGTCAGGAGTGCTAGGCAGCTTGTGCTTCTGACTGTTAACAAGGAAGACTCTGGTGGAAGATCAGATTAGATTAGAGacagcttctgctctgctttctcaGAATGGATACTGAGCATTAACCGTCCCCATGCAGGACGCACGGATTCTTGTTCTTTGTATGTGGTCTGACTATCATTGTGTAGTAAACCATTTCCCTGTTCTTAGAAAATTCCTAGCCATACCTAAGcacttttaaatgttttgtatAGTTGATTTCAAATAACCCTTGGTAATTACAATCTTGAATTGAGTATATTTCTCAAAGTTAAAATTTGACTTTAAACCACTTGGGAacattttattgtattattaattaaaatacttAAGTTTGTTTAActtcttgctttttatttaaaaattaaattttgcaGTAGAACTACAGCTCACAGGAGACTGCTTACCCCTTAAGTGACATTTTCCTGATGGAGGTAATCTGAGAATGGATAAGGGGAAAAAATGCTGAAGGCTGCAATCTCAAGATTAGGACCAAAATAGATACTCAAAGATGTTTGGATTGTGAAATGCTCTTATTGAATAAGGAAAGCATTTTGGGATAAACCCTTGTGAAAGATGCTATGTCACGTTTTAACACTTCTCAACTAAGACCTTTTCTTTAGCACTTTGATGTTTCTTAAGGTGAAACTTAGGCAGGAGGAATTCATGTTCTTAAGGGGACAGAGGGGTGGGTTTTTCTCtgggctttggttttttttttctctgggCATTGCCCTCTGATGGAATTGATATTTCTTTggctgtttgattttatttttttttatattgtatttttaatatttgttgtaTGGTGCCCTGTGAGCATCAAGTACCACCAGATAAATAAAACTTATCACATCTAAA