Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name ATP6V0E1
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ATPase H+ transporting V0 subunit e1
Also known as ATP6H|ATP6V0E|M9.2|Vma21|Vma21p
Coordinate chr5:172983771-173035445
Strand +
Gene summary This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c", and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This encoded protein is possibly part of the V0 subunit. Since two nontranscribed pseudogenes have been found in dog, it is possible that the localization to chromosome 2 for this gene by radiation hybrid mapping is representing a pseudogene. Genomic mapping puts the chromosomal location on 5q35.3. [provided by RefSeq, Jul 2008]

Retrocopy(s) from ATP6V0E1

Retroname Coord Strand Genomic Region ENSG
ATP6V0E1P4 chr1:47550198-47551263 + Intergenic
ENSG00000227883 UCSC
ATP6V0E1P3 chr2:33602040-33602735 + Intergenic
ENSG00000238038 UCSC
ATP6V0E1P2 chr3:41858822-41859609 - Intragenic
ENSG00000223513 UCSC
ATP6V0E1P1 chr5:132948507-132949209 + Intragenic
ENSG00000225364 UCSC

Expression

Transcript Sequences

>NM_003945.4
GCACACGCTGGTCACGCGGTCAGCTATTGACACTTCCTGGTGGGATCCGAGTGAGGCGACGGGGTAGGGGTTGGCGCTCAGGCGGCGACCATGGCGTATCACGGCCTCACTGTGCCTCTCATTGTGATGAGCGTGTTCTGGGGCTTCGTCGGCTTCTTGGTGCCTTGGTTCATCCCTAAGGGTCCTAACCGGGGAGTTATCATTACCATGTTGGTGACCTGTTCAGTTTGCTGCTATCTCTTTTGGCTGATTGCAATTCTGGCCCAACTCAACCCTCTCTTTGGACCGCAATTGAAAAATGAAACCATCTGGTATCTGAAGTATCATTGGCCTTGAGGAAGAAGACATGCTCTACAGTGCTCAGTCTTTGAGGTCACGAGAAGAGAATGCCTTCTAGATGCAAAATCACCTCCAAACCAGACCACTTTTCTTGACTTGCCTGTTTTGGCCATTAGCTGCCTTAAACGTTAACAGCACATTTGAATGCCTTATTCTACAATGCAGCGTGTTTTCCTTTGCCTTTTTTGCACTTTGGTGAATTACGTGCCTCCATAACCTGAACTGTGCCGACTCCACAAAACGATTATGTACTCTTCTGAGATAGAAGATGCTGTTCTTCTGAGAGATACGTTACTCTCTCCTTGGAATCTGTGGATTTGAAGATGGCTCCTGCCTTCTCACGTGGGAATCAGTGAAGTGTTTAGAAACTGCTGCAAGACAAACAAGACTCCAGTGGGGTGGTCAGTAGGAGAGCACGTTCAGAGGGAAGAGCCATCTCAACAGAATCGCACCAAACTATACTTTCAGGATGAATTTCTTCTTTCTGCCATCTTTTGGAATAAATATTTTCCTCCTTTCTATGGAAATCTGGGCTCGGTGTTTGTAAAGTTCATTTTTATAAGCTTTTCTATCGCTACATAATGCCTTTTTAAAAAATGATTTTGTAGTCTAAACTTAGGTTGAGTATATAAACCCTGCCATGTAGCTTGAGATGCCTGAAAAGACTGGTAAGTGCGTTTCttaatcgttcagtaactatttgagtgcctactgcagccaaggcactggagggatcaaagatgtgtaaatttggagtccctgcaagttcacaagctatttggagagataaggttagtatacatagaactgtaatataagGTTGTGTTGGAGCATTGTCCTTAAAGATGGTACCATGGTGAGCAGTTCAAGGTTACCTGCCAGCTGCAGAACAAGGCAGCAAATGCTCCTGAGATGGAACCATCACAGCCTCAGACATAGGACTAAAGAAGTCAAGAGTGATTAAAAAGCCAGGGGCAGGAGACAGTAATTTTGTATTTCAGTAGCAGGCATCTCGATACACTAATTTGAGAGCTTTATTACTTTTAAGAAATTAAAAATTAAAATGAACCTAAATTTTCA