Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Atp5pf
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ATP synthase peripheral stalk subunit F6
Also known as Atp5j
Coordinate chr11:24286806-24294419
Strand -
Gene summary Contributes to ATP hydrolysis activity. Involved in several processes, including negative regulation of icosanoid secretion; positive regulation of heart rate; and response to muscle activity. Located in cell surface; extracellular space; and mitochondrion. Part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Used to study pulmonary hypertension. Biomarker of pulmonary hypertension. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Atp5pf

Retroname Coord Strand Genomic Region ENSG
Atp5jP1 chr2:1111107-1111568 + Intergenic
 N/A UCSC
Atp5jP2 chr2:156216820-156217275 + Intergenic
 N/A UCSC
Atp5jP3 chr2:161515009-161515470 + Intergenic
 N/A UCSC
Atp5jP4 chr5:151784698-151785396 - Intergenic
 N/A UCSC
Atp5jP6 chr10:81365968-81366420 - Intergenic
 N/A UCSC
Atp5jP5 chr5:156169022-156169326 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>XM_008768602.2
CTCCGGAATCCGCCCCGTGGCCCTCGCCCGCGCTCCAGAGCCGGCTGGGAACGGCGGCGGCGCGGGCTCCAGGTACAGCGTCTCTCTGGAGGCGTCCGGTCGCAGACTCTCTTCGAGGCGCTTCCTGTCCGGTGAGCGTCGAACGACTGAAGCGGTGGCCCATAGTGCATTGCGATGGCGGGTAGGCGTGTGTAGGCGGAGCCAGGGCCGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTGGCAGCTCGGGACTCAGTGCAAGTACCACAGACTCAACCATGACTGTTCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAGGAGGAACATTGGTGTTACAGCTGTGGCGTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCTTGGACAAGATAAGAGAGTACAAAGCAAAGCGACTGGCGTCTGGAGGACCTGTTGATACTGGCCCAGAATATCAGCAAGAGGTGGACAGAGAGCTTTTTAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATAAGTTTCCTACCTTCAATTTTGAGGATCCCAAATTTGAAGTCCTCGACAAACCCCAGTCCTGAGGAACATACAAACCATGTGGTAATTTGTCATGACTTAGTTGTACAATTAATCTAAAAAATTCAAATAAACATTCACTTCACAGTT
>XM_017598085.1
CCTCCTCCTGTTTGGCTTCTGTCTCACCTAGAGGCGTCCGGTCGCAGACTCTCTTCGAGGCGCTTCCTGTCCGTACCACAGACTCAACCATGACTGTTCAGAGGATCTTCAGGCTCTCCTCTGTCCTTCGGTCAGCAGTCTCTGTGCATTTGAGGAGGAACATTGGTGTTACAGCTGTGGCGTTTAATAAGGAACTTGATCCTGTACAGAAACTCTTCTTGGACAAGATAAGAGAGTACAAAGCAAAGCGACTGGCGTCTGGAGGACCTGTTGATACTGGCCCAGAATATCAGCAAGAGGTGGACAGAGAGCTTTTTAAGCTTAAACAAATGTATGGTAAAGGAGAGATGGATAAGTTTCCTACCTTCAATTTTGAGGATCCCAAATTTGAAGTCCTCGACAAACCCCAGTCCTGAGGAACATACAAACCATGTGGTAATTTGTCATGACTTAGTTGTACAATTAATCTAAAAAATTCAAATAAACATTCACTTCACAGTTC