Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Hnrnpf
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name heterogeneous nuclear ribonucleoprotein F
Also known as 4833420I20Rik|Hnrpf
Coordinate chr6:117877301-117902583
Strand +
Gene summary Predicted to enable TBP-class protein binding activity and single-stranded RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleoplasm. Is expressed in branchial arch; central nervous system; and sensory organ. Used to study renal glycosuria. Orthologous to human HNRNPF (heterogeneous nuclear ribonucleoprotein F). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hnrnpf

Retroname Coord Strand Genomic Region ENSG
HnrnpfP1 chr1:96952124-96954272 + Intergenic
 ENSMUSG00000044757 UCSC
HnrnpfP2 chr13:14064722-14066848 - Intergenic
 ENSMUSG00000113258 UCSC
HnrnpfP3 chr19:5181620-5183330 - Intergenic
 ENSMUSG00000117729 UCSC
HnrnpfP4 chrX:49413812-49416104 - Intragenic
 ENSMUSG00000083754 UCSC

Expression

Transcript Sequences

>NM_133834.2
CGTCTTGCATCCTTCCGGCTCCGTCGTGGAAGGAGGACTGCGCCTCGTCTTCCTGAAGGTTGAGAACAAAAAGATGCACCTGGACTTTCCCCGGAGCCCTCTGCGTTTTTAAGGCGTCGGGTGGAGTTTGAGTTCGTAAGCCGCGTTCCTTACTGAATATAGAAGTCACTTCTACCTTCCTCCCCTGgaaaacttgTTACCTTCCATTAAGTGTTTCCTACAGAAGGCATCTGTGGTGGTTCTTTAAGctacAAAAAATTGCCCAAGCTTGTGTGACATCAGCCCTGTCAAGTGTCCATGATGCTGGGCCCTGAGGGAGGTGAAGGCTATGTGGTCAAACTCCGTGGCCTACCCTGGTCCTGCTCAATTGAGGACGTACAAAACTTCCTCTCCGACTGCACAATTCATGATGGGGTCGCAGGTGTTCATTTCATTTATACTAGAGAAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCTCTGAAAAAAGACAGGGAAAGCATGGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAGATGGATTGGGTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGAGGCTTCGGGGACTCCCATTTGGATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATTGTGCCAAACGGGATCACACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTCGTTCAGTTTGCCTCACAAGAGTTAGCTGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTTAAGAGCAGTCAGGAGGAAGTTAGATCATACTCAGATCCACCTCTGAAGTTTATGTCTGTGCAAAGGCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGGGCTATGAAGAATACAGTGGCCTCAGTGATGGCTATGGCTTCACCACTGACCTGTTTGGGAGAGACCTCAGCTATTGTCTCTCAGGAATGTATGACCACAGATATGGAGACAGCGAGTTCACAGTGCAGAGCACCACCGGCCACTGCGTCCACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACGACATTTACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGTGACGGGAGAAGCTGATGTTGAGTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGACAGGGCCAACATGCAGCACAGATACATAGAACTCTTCctgaattcaacaacaggggctaGCAATGGGGCTTATAGCAGCCAGGTGATGCAGGGCATGGGCGTGTCAGCTGCCCAGGCAACTTACAGTGGCCTGGAGAGCCAGTCAGTGAGTGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGCGGATATGATTAGTATTGTAGGAACATTTGAGTTATTTCAATCAGAAAATTTCACAGGCAGCCAATAAGCAGTCAAGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTTTGTGAAATCTGGATTAAAAAATTACCTCTTCAGTGTTTCTCATGCAAACTTTTCTTCTAGCATGTAATATTGAGTAAACTAAAACTATTTTCTTCCGCTTTTCTCAATTAACATTTTTGGTAGTATACTTAAGAGTGATGTTATCTGAGTTAAGTAGTTTAAGTATGTTGAGTGGATCTTTAAGCACACCACAGTGAACACACTGGGGATATGTACTTTTCTGGAGAAcccaaaggtgctagatccctgaTGCAAAAGAGAAGCATTTCTCATGTTCATTctagttatattttcatttaaaatctttAGGTTAAGTTTAAgctttttaaaagttagttttGAGAATTGAGACACAATACTAATACTGTAGGAATTGGTGAGGCCTTGACTTAAAGCTTTCTTTGTACTGTGATTTCCTTTTGGGTGTATTTTGCTAAGTGAAACTTGTTAAATTTTTTGTtaactaaatttttttcttaaaataaagactttttcaCAATGA