Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Ap3s1
Plot displaying the genomic locations of a parental gene (in chr18) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name adaptor-related protein complex 3, sigma 1 subunit
Also known as -
Coordinate chr18:46874849-46923893
Strand +
Gene summary This gene encodes the sigma subunit of the heterotetrameric adaptor protein complex AP-3 which is involved in the formation of specialized lysosome-related compartments such as melanosomes. Alternate splicing of this gene results in multiple transcript variants encoding different isoforms. Pseudogenes of this gene are found on chromosomes 1, 8, 16, 17 and X. [provided by RefSeq, Dec 2014]

Retrocopy(s) from Ap3s1

Retroname Coord Strand Genomic Region ENSG
Ap3s1P4 chr16:55690849-55691025 + Intragenic
 N/A UCSC
Ap3s1P1 chr1:171557607-171558156 + Intergenic
 ENSMUSG00000104440 UCSC
Ap3s1P3 chr13:57424732-57424900 + Intergenic
 ENSMUSG00000114411 UCSC
Ap3s1P2 chr8:95131738-95133016 + Intergenic
 ENSMUSG00000094257 UCSC
Ap3s1P6 chrX:37773853-37775168 - Intergenic
 ENSMUSG00000085611 UCSC
Ap3s1P5 chr17:8031539-8032645 + Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001303015.1
CCCTCGGCGCGggagcgcgcgcgcgcgtgcgggAGGGGGCGGGTGGGGAAGCCGCGGCTCGAAGCTCCCGGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCAGCGCCCACCCGGTCGGCCCCGGCCCAGCCATGatcaaggccatcctcatctTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTATAGTGAAGACACGCAACAGCAAATCATCAGGGAGACTTTCCATTTGGTGTCTAAGCGCGATGAGAACGTTTGTAATTTCCTAGAAGGAGGATTATTAATTGGAGGCTCTGACAACAAGCTCATTTACAGACATTATGCAACACTATATTTTGTCTTCTGTGTGGACTCCTCAGAAAGTGAACTTGGCATTTTAGATCTAATTCAAGTATTTGTGGAAACATTAGAcaaatgttttgaaaatgtttGTGAACTGGATTTAATATTCCATGTAGacaaggttCATAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACCAACATGAATGAGATTGTCACACAAATTGATGCACAAAATAAACTGGAGAAATCTGAGACCTTTATCTTTCAGTCTCCCAGACAGGACAGGTAGACAAGGCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGATCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTAAATAAGTATTAAAAAGGCCACTCCCAGGTAAAATCCAGAGGGAACGTCATCTAAGTTTACCATGCAATTGTTTACCAAAAATAGTGAAGGAGACTCTTAACTTTGCTCTTGGAGTTAAGTCAAGGTACTGTATAGAAGCTGCATAAAATCAGTATGGAAGTTCAATGTTGCTTTTCTTGCTCAgtgattttaaagaaattgactAGCTCCcgtgtgattttgttttgttttgtttttcttttcttttctaaattgcaTTCCTATGCCCACATAAAGGCATGCctctatatattggctattacaGTATTTCGAAAAGTGAGATGTTTCTTTAATTATGTACAACCCAAAATGTTGATGTTTTGTATGGATCACAAGTGCAGCATTCTCTAATTCTTTCTGCTGTTTGTCACAATTGTTATTTAAAGAACCAAGTATGTATTGCATGAAAACATGACCTTTTCTTTAGTTTAAATAAACTCCAAGGTAACTGGACTTCTAAAGTACCTTTCTGTTTTGCTTGGTATCTACTTtagcaataatttttttttacaatcttcTGACtcaacaaagtaaataaaagtatattttccCACTGTTAAGCAACTGTCAGTGTTGACTTTTTCAATTCATACTCACGTTTTTATTTCTCAGTGGCTCACTGAACCAGTCAGAAACTGCTCTGTCAAAGACCGAGTGTTGTATCTCAGGCTGTTTATTTTGTATGATGAGACTTACAGTGGGAGATGGTGGGTCTTTTTCAAAAGTGTTAAagatatgttttgtttttctataaataTCCTTGTCTT
>NM_009681.5
CCCTCGGCGCGggagcgcgcgcgcgcgtgcgggAGGGGGCGGGTGGGGAAGCCGCGGCTCGAAGCTCCCGGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCAGCGCCCACCCGGTCGGCCCCGGCCCAGCCATGatcaaggccatcctcatctTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTATAGTGAAGACACGCAACAGCAAATCATCAGGGAGACTTTCCATTTGGTGTCTAAGCGCGATGAGAACGTTTGTAATTTCCTAGAAGGAGGATTATTAATTGGAGGCTCTGACAACAAGCTCATTTACAGACATTATGCAACACTATATTTTGTCTTCTGTGTGGACTCCTCAGAAAGTGAACTTGGCATTTTAGATCTAATTCAAGTATTTGTGGAAACATTAGAcaaatgttttgaaaatgtttGTGAACTGGATTTAATATTCCATGTAGacaaggttCATAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACCAACATGAATGAGATTGTCACACAAATTGATGCACAAAATAAACTGGAGAAATCTGAGGCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGATCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTAAATAAGTATTAAAAAGGCCACTCCCAGGTAAAATCCAGAGGGAACGTCATCTAAGTTTACCATGCAATTGTTTACCAAAAATAGTGAAGGAGACTCTTAACTTTGCTCTTGGAGTTAAGTCAAGGTACTGTATAGAAGCTGCATAAAATCAGTATGGAAGTTCAATGTTGCTTTTCTTGCTCAgtgattttaaagaaattgactAGCTCCcgtgtgattttgttttgttttgtttttcttttcttttctaaattgcaTTCCTATGCCCACATAAAGGCATGCctctatatattggctattacaGTATTTCGAAAAGTGAGATGTTTCTTTAATTATGTACAACCCAAAATGTTGATGTTTTGTATGGATCACAAGTGCAGCATTCTCTAATTCTTTCTGCTGTTTGTCACAATTGTTATTTAAAGAACCAAGTATGTATTGCATGAAAACATGACCTTTTCTTTAGTTTAAATAAACTCCAAGGTAACTGGACTTCTAAAGTACCTTTCTGTTTTGCTTGGTATCTACTTtagcaataatttttttttacaatcttcTGACtcaacaaagtaaataaaagtatattttccCACTGTTAAGCAACTGTCAGTGTTGACTTTTTCAATTCATACTCACGTTTTTATTTCTCAGTGGCTCACTGAACCAGTCAGAAACTGCTCTGTCAAAGACCGAGTGTTGTATCTCAGGCTGTTTATTTTGTATGATGAGACTTACAGTGGGAGATGGTGGGTCTTTTTCAAAAGTGTTAAagatatgttttgtttttctataaataTCCTTGTCTT