Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name CNN2
Plot displaying the genomic locations of a parental gene (in chr19) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name calponin 2
Also known as -
Coordinate chr19:1026608-1039065
Strand +
Gene summary The protein encoded by this gene, which can bind actin, calmodulin, troponin C, and tropomyosin, may function in the structural organization of actin filaments. The encoded protein could play a role in smooth muscle contraction and cell adhesion. Several pseudogenes of this gene have been identified, and are present on chromosomes 1, 2, 3, 6, 9, 11, 13, 15, 16, 21 and 22. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2015]

Retrocopy(s) from CNN2

Retroname Coord Strand Genomic Region ENSG
CNN2P14 chr11:133863708-133865671 - Intergenic
ENSG00000213153 UCSC
CNN2P10 chr1:166796260-166797329 + Intergenic
ENSG00000232223 UCSC
CNN2P12 chr13:18726704-18727438 + Intergenic
ENSG00000204718 UCSC
CNN2P15 chr15:57979074-57980653 - Intragenic
ENSG00000259477 UCSC
CNN2P16 chr16:68650755-68651950 - Intragenic
Intragenic
ENSG00000260860 UCSC
CNN2P7 chr21:13826699-13828287 + Intergenic
ENSG00000215562 UCSC
CNN2P1 chr22:30045111-30047237 - Intergenic
ENSG00000227201 UCSC
CNN2P8 chr2:94737325-94739457 + Intergenic
ENSG00000213355 UCSC
CNN2P6 chr3:31180587-31182643 - Intergenic
ENSG00000213854 UCSC
CNN2P9 chr6:110858230-110860320 + Intragenic
Intragenic
ENSG00000213149 UCSC
CNN2P2 chr9:40345496-40347060 - Intergenic
ENSG00000227069 UCSC
CNN2P4 chr9:42971740-42973301 - Intergenic
ENSG00000213816 UCSC
CNN2P3 chr9:64485517-64487081 - Intergenic
ENSG00000235832 UCSC
CNN2P13 chr9:66029251-66030816 + Intergenic
ENSG00000278068 UCSC

Expression

Transcript Sequences

>NM_004368.4
ggtcccgtcccgtcccgtcctgtgcggccccgtcccgccgcccgcccgccagccATGAGCTCCACGCAGTTCAACAAGGGCCCCTCGTACGGGCTGTCGGCCGAGGTCAAGAACCGGCTCCTGTCCAAATATGACCCCCAGAAGGAGGCAGAGCTCCGCACCTGGATCGAGGGACTCACCGGCCTCTCCATCGGCCCCGACTTCCAGAAGGGCCTGAAGGATGGAACTATCTTATGCACACTCATGAACAAGCTACAGCCGGGCTCCGTCCCCAAGATCAACCGCTCCATGCAGAACTGGCACCAGCTAGAAAACCTGTCCAACTTCATCAAGGCCATGGTCAGCTACGGCATGAACCCTGTGGACCTGTTCGAGGCCAACGACCTGTTTGAGAGTGGGAACATGACgcaggtgcaggtgtctcttctcgccctggcggggaagGCCAAGACTAAGGGGCTGCAGAGCGGGGTGGACATTGGCGTCAAGTACTCGGAGAAGCAGGAGCGGAATTTCGACGATGCCACCATGAAGGCTGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACTGCCTACGGCACGAGAAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACAAGTGTGCCAGCCAGGTGGGCATGACGGCTCCCGGGACCCGGCGGCACATCTATGATACCAAGCTGGGAACCGACAAGTGTGACAACTCCTCCATGTCCCTGCAGATGGGCTACACGCAGGGCGCCAACCAGAGCGGCCAGGTCTTCGGCCTGGGCCGGCAGATATATGACCCCAAGTACTGCCCGCAAGGCACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATATCCCCCTTACTACCAGGAGGAGGCCGGCTACTGAGGCTCCCAGCACGCTCTCTCCCCACATCGTCTGCCCATCTGGGtttttgggtttttctgtgttttcatcttttttttttttttcttAACCCGTTCAGTGCTGCCAGTCAACCAAGGGTCTGTGAGTGTCAGCGTGGGATCAGGCAGCAGAGCTTTTTTCCCCTTTGCCTTGATCCTTCGCAAGGCTGAGCCACTGGGCTGTGGGGGAAGGGGTCAAGGCCATATCCCAATACGTGTAGGGCGAGGGTCCCTGCTGGCACATTCAGGCTGTGCTGGGAAGAAGAGACCTGGGCTTGGAAGGAACCGGTCCCCGACGGTTTCTGCTTGCCTCGCCTCTTCCCCCTTTTGTCAGCTGAGCAGTTTGTGGTTTCTATGCCCGCAAGTTTCAGGAAGTATTCACAAAAGAAAAATACATTTTTTCCCCCAGGGGTGGGGCAAGGACAGTGGAGAGAGTGCTAGGAAATGAGTCCCCTGGGAAAGGGGACCGGGCCGTGATGTTAAATATCTCCGGCTCCCAAGTGACTGGATTTGCCTAGGACCTTCAGACCAACAGACTTCAGACCCTCAGACCTGCCCCGGGGCCAGGTGGAGAAAGTGAGGGCCGTACAAGGAAGTGAAATTCTGAGTTGTTGGGGCTAAGCCTGACCCCCTCTCCATGCTCCCCGCCCCAACCCACTCTGGCCTCAGTAGAtttttttttcagttgtggttgttgcccaggctggagtgcagtggcgccatcttggctcactgcacctccaccttccgggctcaagcgattctccagcctcagcctcctgagtagctaggactgcaggtgctccaccacgcccggctaatttttgtatttttagtagagatggggtttccccatgttggccaggctggtctcgaactcctggcctcaggtgtgatccgcccgcctccgcctccccaagcgctgagattacaggtgtgagccaccgtgcccagccCCTCAGTAGGTTTTAAGGAGCCCCCAGCCCTCCTCCCTTCTGGGCCCGACCAGCTTATACTGCTCCATCTTCCCCGGCCACATGCCCCGCCAAGTACTGCACAGGGACCCCCCACCCAGGGGACCTGCTCCGTGAGATAATGTGAAATACGACTGTGGACCAAACGCAATAAAACCTCTGTTTGTACGAAGA