Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Gapdh
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name glyceraldehyde-3-phosphate dehydrogenase
Also known as Gapd
Coordinate chr6:125138815-125143430
Strand -
Gene summary This gene encodes a member of the glyceraldehyde-3-phosphate dehydrogenase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The encoded protein was originally identified as a key glycolytic enzyme that converts D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Subsequent studies have assigned a variety of additional functions to the protein including nitrosylation of nuclear proteins, the regulation of mRNA stability, and acting as a transferrin receptor on the cell surface of macrophage. Alternative splicing results in multiple transcript variants. Many pseudogenes similar to this locus are found throughout the mouse genome. [provided by RefSeq, Jan 2014]

Retrocopy(s) from Gapdh

Retroname Coord Strand Genomic Region ENSG
GapdhP1 chr1:11293860-11294394 - Intragenic
ENSMUSG00000101827 UCSC
GapdhP2 chr1:12636126-12636657 + Intergenic
ENSMUSG00000097628 UCSC
GapdhP3 chr1:145060153-145060674 + Intergenic
ENSMUSG00000097130 UCSC
GapdhP61 chr10:81564231-81564514 + Intergenic
ENSMUSG00000112621 UCSC
GapdhP55 chr10:122005470-122006315 + Intergenic
ENSMUSG00000098138 UCSC
GapdhP71 chr12:29366912-29367081 - Intergenic
ENSMUSG00000112776 UCSC
GapdhP72 chr13:17995610-17996355 + Intergenic
ENSMUSG00000081285 UCSC
GapdhP74 chr13:98538557-98539321 - Intergenic
ENSMUSG00000098113 UCSC
GapdhP79 chr15:18163965-18164885 + Intergenic
ENSMUSG00000098222 UCSC
GapdhP80 chr15:39044382-39044646 + Intergenic
ENSMUSG00000098021 UCSC
GapdhP82 chr15:84750582-84751556 + Intergenic
ENSMUSG00000097954 UCSC
GapdhP89 chr18:56105431-56106561 + Intergenic
ENSMUSG00000098141 UCSC
GapdhP38 chr7:35933790-35934334 + Intragenic
ENSMUSG00000098016 UCSC
GapdhP4 chr1:15338840-15340093 - Intergenic
ENSMUSG00000073737 UCSC
GapdhP6 chr1:186692640-186693757 + Intergenic
ENSMUSG00000097935 UCSC
GapdhP57 chr10:22667157-22667828 + Intergenic
ENSMUSG00000112727 UCSC
GapdhP58 chr10:33684312-33685564 - Intergenic
ENSMUSG00000071343 UCSC
GapdhP59 chr10:39887789-39888916 + Intragenic
ENSMUSG00000096171 UCSC
GapdhP60 chr10:44882142-44883259 + Intergenic
ENSMUSG00000095168 UCSC
GapdhP62 chr10:88486233-88486772 - Intergenic
ENSMUSG00000112428 UCSC
GapdhP56 chr10:127148990-127150064 + Intergenic
ENSMUSG00000098057 UCSC
GapdhP65 chr11:3901641-3902454 + Intergenic
ENSMUSG00000082816 UCSC
GapdhP63 chr11:20284832-20286085 - Intergenic
ENSMUSG00000078965 UCSC
GapdhP64 chr11:26736560-26737816 + Intergenic
ENSMUSG00000069939 UCSC
GapdhP67 chr11:48625333-48626460 - Intergenic
ENSMUSG00000083460 UCSC
GapdhP68 chr11:60234527-60234687 + Intragenic
ENSMUSG00000082148 UCSC
GapdhP69 chr11:63203090-63204209 - Intergenic
ENSMUSG00000081600 UCSC
GapdhP73 chr13:49958219-49959413 - Intragenic
ENSMUSG00000069236 UCSC
GapdhP77 chr14:48646014-48647255 + Intergenic
ENSMUSG00000098192 UCSC
GapdhP75 chr14:103607721-103608954 - Intergenic
ENSMUSG00000098111 UCSC
GapdhP81 chr15:4914529-4915785 + Intergenic
ENSMUSG00000115205 UCSC
GapdhP78 chr15:12574902-12576157 + Intragenic
ENSMUSG00000078300 UCSC
GapdhP83 chr15:93094403-93095678 + Intergenic
ENSMUSG00000097989 UCSC
GapdhP84 chr16:64731563-64732688 + Intergenic
ENSMUSG00000097999 UCSC
GapdhP87 chr17:9539493-9540139 - Intergenic
ENSMUSG00000097958 UCSC
GapdhP85 chr17:14929245-14930495 + Intergenic
ENSMUSG00000079311 UCSC
GapdhP86 chr17:62087729-62088608 - Intergenic
ENSMUSG00000098123 UCSC
GapdhP88 chr18:54117309-54118447 + Intergenic
ENSMUSG00000069376 UCSC
GapdhP90 chr19:16255088-16256187 + Intragenic
ENSMUSG00000078528 UCSC
GapdhP91 chr19:40200753-40201868 + Intergenic
ENSMUSG00000098091 UCSC
GapdhP8 chr2:11413659-11414914 - Intergenic
ENSMUSG00000082424 UCSC
GapdhP13 chr2:28823440-28824693 - Intergenic
ENSMUSG00000083773 UCSC
GapdhP14 chr2:43408520-43409481 - Intergenic
ENSMUSG00000080994 UCSC
GapdhP7 chr2:104121848-104123102 + Intragenic
ENSMUSG00000081721 UCSC
GapdhP9 chr2:146596579-146597695 - Intergenic
ENSMUSG00000080870 UCSC
GapdhP10 chr2:147131748-147132293 + Intergenic
ENSMUSG00000084371 UCSC
GapdhP11 chr2:149585024-149585990 + Intergenic
ENSMUSG00000081494 UCSC
GapdhP12 chr2:151215854-151216462 + Intergenic
ENSMUSG00000083391 UCSC
GapdhP18 chr3:52520183-52521438 + Intergenic
ENSMUSG00000070490 UCSC
GapdhP19 chr3:61369097-61370338 - Intergenic
ENSMUSG00000098208 UCSC
GapdhP20 chr3:78824492-78825766 + Intergenic
ENSMUSG00000070443 UCSC
GapdhP15 chr3:122023661-122024917 - Intergenic
ENSMUSG00000078592 UCSC
GapdhP16 chr3:139355067-139356321 + Intragenic
ENSMUSG00000106574 UCSC
GapdhP17 chr3:142668299-142669554 + Intergenic
ENSMUSG00000078162 UCSC
GapdhP21 chr4:41168934-41169651 + Intragenic
ENSMUSG00000082186 UCSC
GapdhP22 chr4:57370771-57372026 - Intergenic
ENSMUSG00000095042 UCSC
GapdhP23 chr4:83112152-83113431 + Intergenic
ENSMUSG00000083245 UCSC
GapdhP24 chr4:84023066-84024342 + Intergenic
ENSMUSG00000083044 UCSC
GapdhP25 chr4:91739723-91740978 - Intergenic
ENSMUSG00000095937 UCSC
GapdhP27 chr5:13092217-13093473 - Intergenic
ENSMUSG00000096810 UCSC
GapdhP28 chr5:28743495-28744768 + Intergenic
ENSMUSG00000105775 UCSC
GapdhP29 chr5:96009500-96010753 + Intergenic
ENSMUSG00000096617 UCSC
GapdhP26 chr5:106010387-106011640 - Intergenic
ENSMUSG00000094708 UCSC
GapdhP31 chr6:83851180-83852434 - Intragenic
ENSMUSG00000079501 UCSC
GapdhP32 chr6:86261796-86262923 + Intergenic
ENSMUSG00000098175 UCSC
GapdhP33 chr6:91405792-91407047 + Intergenic
ENSMUSG00000098240 UCSC
GapdhP34 chr6:94797810-94798340 + Intergenic
ENSMUSG00000097943 UCSC
GapdhP36 chr7:12477005-12477646 + Intergenic
ENSMUSG00000098135 UCSC
GapdhP37 chr7:33102171-33103297 + Intragenic
ENSMUSG00000098080 UCSC
GapdhP39 chr7:41774438-41775692 - Intragenic
Intragenic
ENSMUSG00000092257 UCSC
GapdhP40 chr7:51396374-51397628 + Intragenic
ENSMUSG00000078636 UCSC
GapdhP41 chr7:89256841-89258086 + Intergenic
ENSMUSG00000098019 UCSC
GapdhP35 chr7:100409830-100411085 - Intragenic
ENSMUSG00000097388 UCSC
GapdhP42 chr8:28675795-28676902 + Intergenic
ENSMUSG00000098056 UCSC
GapdhP43 chr8:46707666-46708787 - Intragenic
ENSMUSG00000071102 UCSC
GapdhP44 chr8:58003263-58004518 + Intragenic
ENSMUSG00000070025 UCSC
GapdhP45 chr8:64231014-64232133 + Intergenic
ENSMUSG00000098106 UCSC
GapdhP47 chr8:81660233-81661156 + Intergenic
ENSMUSG00000098223 UCSC
GapdhP48 chr8:92414949-92415384 - Intergenic
ENSMUSG00000110371 UCSC
GapdhP49 chr8:93442373-93443628 - Intergenic
ENSMUSG00000078967 UCSC
GapdhP50 chr9:37597160-37598053 + Intergenic
ENSMUSG00000097946 UCSC
GapdhP51 chr9:45747179-45748305 - Intergenic
ENSMUSG00000098194 UCSC
GapdhP52 chr9:51533971-51535091 + Intergenic
ENSMUSG00000111162 UCSC
GapdhP53 chr9:75600730-75602012 - Intergenic
ENSMUSG00000098232 UCSC
GapdhP54 chr9:77976241-77976719 + Intergenic
ENSMUSG00000111596 UCSC
GapdhP93 chrX:79237274-79238530 - Intragenic
ENSMUSG00000081221 UCSC
GapdhP92 chrX:150728294-150729566 + Intergenic
ENSMUSG00000082778 UCSC
GapdhP94 chrY:38575055-38576311 + Intergenic
ENSMUSG00000096438 UCSC
GapdhP30 chr6:128179444-128180268 - Intergenic
ENSMUSG00000097979 UCSC
GapdhP46 chr8:76131964-76133216 - Intergenic
ENSMUSG00000110469 UCSC
GapdhP5 chr1:180154688-180155820 - Intragenic
N/A UCSC
GapdhP66 chr11:4513626-4514360 + Intragenic
Intragenic
N/A UCSC
GapdhP70 chr12:15778025-15779144 + Intergenic
N/A UCSC
GapdhP76 chr14:11187767-11189022 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001289726.1
AACCCTTAAGAGGGATGCTGCCCTTACCCCGGGGTCCCAGCTTAGGTTCATCAGGTAAACTCAGGAGAGTGTTTCCTCGTcccgtagacaaaatggtgaaggtcggtgtgaacggATTTGGCCGTATTGggcgcctggtcaccagggctgccatttgcagtggcaaagtggagattgttgccatcaacgaccccttcattgacctcaactacatggtctacatgttccagtatgactccactcacggcaaattcaacggcacagtcaaggccgagaatgggaagcttgtcatcaacgggaagcccatcaccatcttccaggagcgagaccccactaacatcaaatggggtgaggccggtgctgagtatgtcgtggagtctactggtgtcttcaccaccatggagaaggccggggcccacttgaagggtggagccaaaagggtcatcatctccgccccttctgccgatgcccccatgtttgtgatgggtgtgaaccacgagaaatatgacaactcactcaagattgtcagcaatgcatcctgcaccaccaactgcttagcccccctggccaaggtcatccatgacaactttggcattgtggaagggctcatgACcacagtccatgccatcactgccacccagaagactgtggatggcccctctggaaagctgtggcgtgatggccgtggggctgcccagaacatcatccctgcatccactggtgctgccaaggctgtgggcaaggtcatcccagagctgaacgggaagctcactggcatggccttccgtgttcctacccccaatgtgtccgtcgtggatctgacgtgccgcctggagaaacctgccaagtatgatgacatcaagaaggtggtgaagcaggcatctgagggcccactgaagggcatcttgggctacactgaggaccaggttgtctcctgcgacttcaacagcaactcccactcttccaccttcgatgccggggctggcattgctctcaatgacaactttgtcaagctcatttcctggtatgacaatgaatacggctacagcaacagggtggtggacctcatggcctacatggcctccaaggagtaagaaaccctggaccacccaccccagcaaggacactgagcaagagaggccctatcccaactcggcccccaacactgagcatctccctcacaatttccatcccagacccccataataacaggaggggcctagggagccctccctactctcttgaataccatcaataaagttcgctgCACCCAC
>NM_008084.3
ggggaaatgaGAGAGGCCCAGCTACTCGCGGCTTTACGGGTGCACGTAGCTCAGGCCTCTGCGCCCTTGAGCTAGGACTGGATAAGCAGGGCGGGAGGCGGGGCGCGCGTCATCAGCTCCCCCCCACCATCCGGGTTCCTATAAATACGGACTGCAGCCCTCCCTggtgctctctgctcctccctgttccagagacggccgcatcttcttgtgcagtgccagCCTCGTcccgtagacaaaatggtgaaggtcggtgtgaacggATTTGGCCGTATTGggcgcctggtcaccagggctgccatttgcagtggcaaagtggagattgttgccatcaacgaccccttcattgacctcaactacatggtctacatgttccagtatgactccactcacggcaaattcaacggcacagtcaaggccgagaatgggaagcttgtcatcaacgggaagcccatcaccatcttccaggagcgagaccccactaacatcaaatggggtgaggccggtgctgagtatgtcgtggagtctactggtgtcttcaccaccatggagaaggccggggcccacttgaagggtggagccaaaagggtcatcatctccgccccttctgccgatgcccccatgtttgtgatgggtgtgaaccacgagaaatatgacaactcactcaagattgtcagcaatgcatcctgcaccaccaactgcttagcccccctggccaaggtcatccatgacaactttggcattgtggaagggctcatgACcacagtccatgccatcactgccacccagaagactgtggatggcccctctggaaagctgtggcgtgatggccgtggggctgcccagaacatcatccctgcatccactggtgctgccaaggctgtgggcaaggtcatcccagagctgaacgggaagctcactggcatggccttccgtgttcctacccccaatgtgtccgtcgtggatctgacgtgccgcctggagaaacctgccaagtatgatgacatcaagaaggtggtgaagcaggcatctgagggcccactgaagggcatcttgggctacactgaggaccaggttgtctcctgcgacttcaacagcaactcccactcttccaccttcgatgccggggctggcattgctctcaatgacaactttgtcaagctcatttcctggtatgacaatgaatacggctacagcaacagggtggtggacctcatggcctacatggcctccaaggagtaagaaaccctggaccacccaccccagcaaggacactgagcaagagaggccctatcccaactcggcccccaacactgagcatctccctcacaatttccatcccagacccccataataacaggaggggcctagggagccctccctactctcttgaataccatcaataaagttcgctgCACCCAC