Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Pgk1
Plot displaying the genomic locations of a parental gene (in chrX) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name phosphoglycerate kinase 1
Also known as Pgk-1
Coordinate chrX:105230706-105247305
Strand +
Gene summary The protein encoded by this gene is a glycolytic enzyme that catalyzes the conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate. Additionally, this protein is secreted by tumor cells where it participates in angiogenesis by functioning to reduce disulfide bonds in the serine protease, plasmin, which consequently leads to the release of the tumor blood vessel inhibitor angiostatin. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. Many pseudogenes of this gene are found throughout the mouse genome. [provided by RefSeq, Jan 2014]

Retrocopy(s) from Pgk1

Retroname Coord Strand Genomic Region ENSG
Pgk1P3 chr12:10948565-10950313 - Intergenic
ENSMUSG00000066632 UCSC
Pgk1P4 chr12:93683261-93683923 + Intergenic
ENSMUSG00000112982 UCSC
Pgk1P5 chr14:86467021-86467240 - Intergenic
ENSMUSG00000115128 UCSC
Pgk1P6 chr16:81705894-81706602 + Intergenic
ENSMUSG00000116678 UCSC
Pgk1P8 chr18:6760084-6760956 - Intergenic
ENSMUSG00000117359 UCSC
Pgk1P1 chr3:18618656-18620215 + Intergenic
ENSMUSG00000105280 UCSC
Pgk1P2 chr3:58009989-58011717 - Intergenic
ENSMUSG00000069008 UCSC
Pgk1P7 chr17:40518179-40519366 - Intergenic
ENSMUSG00000031233 UCSC

Expression

Transcript Sequences

>NM_008828.3
GGGGGCGGGCTCAGGGGCGGGCTCAGGGGCGGGGCGGGCGCCCGAAGGTCCTCCGGAGGCCCGGCATTCTGCACGCTTCAAAAGCGCACGTCTGCCGCGctgttctcctcttcctcatctccgGGCCTTTCGACCTCACGGTGTTGCCAAAATGTCGCTTTCCAACAAGCTGACTTTGGACAAGCTGGACGTGAAGGGGAAGCGGGTCGTGATGAGgGTGGACTTCAACGTTCCTATGAAGAACAACCAGATAACAAACAACCAAAGGATCAAGGCTGCTGTTCCAAGCATCAAATTCTGCTTGGACAATGGAGCCAAGTCCGTTGTCCTTATGAGCCACCTGGGCCGGCCTGATGGTGTTCCCATGCCTGACAAGTACTCCTTAGAGCCAGTTGCTGCTGAACTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAGGATTGTGTGGGCCCAGAAGTCGAGAATGCCTGTGCCAACCCAGCGGCTGGGACTGTCATCCTGCTGGAAAACCTCCGCTTTCAtgtagaggaagaagggaagggaaaagatgcTTCTGGAAACAAGGTTAAAGCTGAGCCGGCCAAAATTGATGCTTTCCGAGCCTCACTGTCCAAACTAGGAGATGTCTATGTCAATGATGCTTTTGGGACTGCACACCGAGCCCATAGctCCATGGTGGGTGTGAATCTGCCACAGAAGGCTGGTGGATTTTTGATGAAGAAGGAGCTGAACTACTTTGCCAAGGCTTTGGAGAGTCCAGAGCGACCCTTCCTGGCTATCTTGGGAGGCGCTAAAGTTGCAGACAAGATCCAGCTGATCAATAATATGCTAGACAAAGTCAATGAGATGATCATTGGTGGTGGAATGGCCTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGCACATCTCTGTATGATGAAGAAGGAGCCAAGATTGTCAAAGATCTCATGTCCAAAGCTGAGAAAAATGGTGTGAAGATTACCTTGCCTGTTGACTTTGTCACTGCTGACAAATTTGATGAGAATGCCAAGACTGGCCAAGCTACTGTGGCCTCTGGTATACCTGCTGGCTGGATGGGCTTGGACTGTGGTACTGAGAGCAGCAAGAAATATGCCGAGGCTGTGGGTCGAGCTAAGCAGATTGTTTGGAATGGTCCTGTTGGGGTATTTGAATGGGAAGCCTTTGCCAGGGGAACCAAGTCACTCATGGATGAGGTGGTGAAAGCCACTTCTAGGGGTTGCATCACTATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACAGAGGATAAAGTCAGCCATGTGAGCACTGGGGGCGGTGCCAGTCTAGAGCTCCTGGAAGGTAAAGTCCTTCCTggggtggatgctctcagcaatGTTTAGTATTTTCTTTCCTGCCTTTGGTTCCTGTGCTCCTAAGTCAACCTAGTGTTTTCCACATCTCCATTTGGTGTTAGCGCAAGATTCAGCTAGTGGCTGAGATGTGGCACCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCTCGTCTTTACTGCATCAGGATTTGTCTGTGTTCTTCAAGATCCCATTTAAATTCCTTAGTGACTAAAACCATTGTGCATTGTAGAGGGCGTCTATTTATATTCTGCCTGAGAAAGGAAGTGAGCTGTAaaggctgagctctctctctgacGTATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGATGATCTATTAAACAATAAAGATGTCCACTAAAATGGAA