Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name Pgk1P7
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr17:40518179-40519366  UCSC
Strand -
Parental Sequence NM_008828.3
Parental seq. overlap 953 bp
Parental seq. overlap (%) 52.2%
Genomic Region Intergenic
Retrocopy Summary Pgk1P7, located on chr17:40518179-40519366, is a retrocopy of the parental gene Pgk1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Pgk1
Full Name phosphoglycerate kinase 1
Also known as Pgk-1
Coordinate chrX:105230706-105247305
Strand +
Gene summary The protein encoded by this gene is a glycolytic enzyme that catalyzes the conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate. Additionally, this protein is secreted by tumor cells where it participates in angiogenesis by functioning to reduce disulfide bonds in the serine protease, plasmin, which consequently leads to the release of the tumor blood vessel inhibitor angiostatin. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. Many pseudogenes of this gene are found throughout the mouse genome. [provided by RefSeq, Jan 2014]

Homology

Species Scientific Name Retrocopy
Rat Rattus norvegicus Pgk1P9
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Pgk1P7
ATGAGAGTAGACTTCAACGTTCCCATGAAGAATAACCAAATTACAAACAACCAGAGAATCAAGGCTGCCATCCCAAGTATCAAGCACTGTCTGGACAATGGAGCCAAGTCCGTAGTTCTCATGAGTCACCTCGGTCGGCCTGATGGTATCCCTATGCCAGACAAGTATTCATTAGAGCCTGTTGCTGATGAGCTCAAGTCCCTGCTGAACAAGGACGTCATATTCTTGAAGGACTGTGTGGGCCCTGAAGTAGAGCAAGCCTGTGCCAACCCAGATAATGGGTCTATCATCCTGCTGGAGAACCTGCGCTTCCATGTGGAGGAAGAAGGTAAGGGTAAAGATTCTTCTGGAAAAAAGATTAGTGCTGACCCTGCTAAAGTAGAAGCCTTCCAAGCATCACTGTCTAAACTTGGCGATGTCTATGTCAACGATGCATTTGGCACTGCACATCGGGCTCACAGTTCTACGGTCGGAGTAAATTTGCCCCAGAAGGCATCTGGTTTCCTTATGAAGAAGGAACTGGATTATTTTTCCAAGGCTTTAGAAAAGCCAGAGAGGCCCTTCCTGGCTATCCTTGGTGGAGCCAAAGTGAAAGACAAGATCCAACTCATTAAAAATATGTTAGACAAAGTCAATTTCATGATTATTGGTGGTGGAATGGCTTACACCTTcctgaaagaactcaagaacatgCAGATTGGTGCTTCCTTGTTTGATGAAGAGGGAGCCACGATTGTTAAAGAGATCAtggaaaaagcagaaaagaatgGTGTAAAGATAGTTTTTCCTGTTGACTTTGTTACTGGTGACAAGTTTGATGAGAATGCTAAAGTTGGACAAGCCACTATAGAATCTGGTATACCATCTGGTTGGATGGGCTTGGACTGTGGCCCTGAGAGCATTAAAATCAATGCTCAAATTGTGGCCCAAGCAAAGCTGATAGTTTGGAATGGACCTATTGGGGTATTTGAATGGGATGCCTTTGCTAAAGGAACCAAAGCTCTCATGGATGAAGTTGTAAAGGCCACCTCCAATGGCTGTGTCACCATTATAGGAGGCGGAGATACTGCTACTTGCTGCGCCAAATGGGGCACTGAAGACAAGGTCAGCCATGTGAGCACAGGAGGTGGGGCAAGTCTTGAGCTTCTGGAAGGTAAAATCCTTCCAGGGGTAGAGGCCCTCAGCAAC
>NM_008828.3
GGGGGCGGGCTCAGGGGCGGGCTCAGGGGCGGGGCGGGCGCCCGAAGGTCCTCCGGAGGCCCGGCATTCTGCACGCTTCAAAAGCGCACGTCTGCCGCGctgttctcctcttcctcatctccgGGCCTTTCGACCTCACGGTGTTGCCAAAATGTCGCTTTCCAACAAGCTGACTTTGGACAAGCTGGACGTGAAGGGGAAGCGGGTCGTGATGAGgGTGGACTTCAACGTTCCTATGAAGAACAACCAGATAACAAACAACCAAAGGATCAAGGCTGCTGTTCCAAGCATCAAATTCTGCTTGGACAATGGAGCCAAGTCCGTTGTCCTTATGAGCCACCTGGGCCGGCCTGATGGTGTTCCCATGCCTGACAAGTACTCCTTAGAGCCAGTTGCTGCTGAACTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAGGATTGTGTGGGCCCAGAAGTCGAGAATGCCTGTGCCAACCCAGCGGCTGGGACTGTCATCCTGCTGGAAAACCTCCGCTTTCAtgtagaggaagaagggaagggaaaagatgcTTCTGGAAACAAGGTTAAAGCTGAGCCGGCCAAAATTGATGCTTTCCGAGCCTCACTGTCCAAACTAGGAGATGTCTATGTCAATGATGCTTTTGGGACTGCACACCGAGCCCATAGctCCATGGTGGGTGTGAATCTGCCACAGAAGGCTGGTGGATTTTTGATGAAGAAGGAGCTGAACTACTTTGCCAAGGCTTTGGAGAGTCCAGAGCGACCCTTCCTGGCTATCTTGGGAGGCGCTAAAGTTGCAGACAAGATCCAGCTGATCAATAATATGCTAGACAAAGTCAATGAGATGATCATTGGTGGTGGAATGGCCTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGCACATCTCTGTATGATGAAGAAGGAGCCAAGATTGTCAAAGATCTCATGTCCAAAGCTGAGAAAAATGGTGTGAAGATTACCTTGCCTGTTGACTTTGTCACTGCTGACAAATTTGATGAGAATGCCAAGACTGGCCAAGCTACTGTGGCCTCTGGTATACCTGCTGGCTGGATGGGCTTGGACTGTGGTACTGAGAGCAGCAAGAAATATGCCGAGGCTGTGGGTCGAGCTAAGCAGATTGTTTGGAATGGTCCTGTTGGGGTATTTGAATGGGAAGCCTTTGCCAGGGGAACCAAGTCACTCATGGATGAGGTGGTGAAAGCCACTTCTAGGGGTTGCATCACTATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACAGAGGATAAAGTCAGCCATGTGAGCACTGGGGGCGGTGCCAGTCTAGAGCTCCTGGAAGGTAAAGTCCTTCCTggggtggatgctctcagcaatGTTTAGTATTTTCTTTCCTGCCTTTGGTTCCTGTGCTCCTAAGTCAACCTAGTGTTTTCCACATCTCCATTTGGTGTTAGCGCAAGATTCAGCTAGTGGCTGAGATGTGGCACCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCTCGTCTTTACTGCATCAGGATTTGTCTGTGTTCTTCAAGATCCCATTTAAATTCCTTAGTGACTAAAACCATTGTGCATTGTAGAGGGCGTCTATTTATATTCTGCCTGAGAAAGGAAGTGAGCTGTAaaggctgagctctctctctgacGTATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGATGATCTATTAAACAATAAAGATGTCCACTAAAATGGAA

Publications

PMID - Link Title