Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl7
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L7
Also known as Rpl7a|Surf-3
Coordinate chr1:16171519-16174657
Strand -
Gene summary Predicted to enable identical protein binding activity and nucleic acid binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Located in synapse. Part of cytosolic large ribosomal subunit and polysome. Is expressed in several structures, including brain; early conceptus; female reproductive system; and liver. Orthologous to human RPL7 (ribosomal protein L7). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl7

Retroname Coord Strand Genomic Region ENSG
Rpl7P1 chr1:157423914-157424451 + Intergenic
ENSMUSG00000103021 UCSC
Rpl7P2 chr1:180880229-180880387 - Intragenic
ENSMUSG00000104390 UCSC
Rpl7P12 chr10:46956644-46957408 + Intergenic
ENSMUSG00000111057 UCSC
Rpl7P13 chr11:29502018-29502986 - Intragenic
Intragenic
ENSMUSG00000081575 UCSC
Rpl7P14 chr11:46618620-46619523 + Intergenic
ENSMUSG00000080776 UCSC
Rpl7P15 chr14:114139458-114140247 + Intergenic
ENSMUSG00000115269 UCSC
Rpl7P16 chr15:59082745-59083635 + Intergenic
ENSMUSG00000025922 UCSC
Rpl7P17 chr17:33071115-33072013 - Intergenic
ENSMUSG00000117468 UCSC
Rpl7P18 chr18:29790043-29790646 - Intergenic
ENSMUSG00000117626 UCSC
Rpl7P4 chr5:21803710-21804610 + Intragenic
ENSMUSG00000106135 UCSC
Rpl7P5 chr5:41499440-41500337 + Intergenic
ENSMUSG00000106895 UCSC
Rpl7P6 chr5:82484697-82485561 + Intergenic
ENSMUSG00000106926 UCSC
Rpl7P8 chr7:71346834-71347213 + Intragenic
Intragenic
ENSMUSG00000108972 UCSC
Rpl7P10 chr9:31694277-31695065 + Intergenic
ENSMUSG00000110778 UCSC
Rpl7P9 chr9:109799554-109800342 + Intragenic
ENSMUSG00000106208 UCSC
Rpl7P23 chrX:35931845-35932735 + Intergenic
ENSMUSG00000081281 UCSC
Rpl7P19 chrX:106398422-106399174 - Intergenic
ENSMUSG00000080758 UCSC
Rpl7P20 chrX:136014308-136014841 + Intergenic
ENSMUSG00000083493 UCSC
Rpl7P21 chrX:152439643-152440430 + Intragenic
ENSMUSG00000083488 UCSC
Rpl7P22 chrX:154020562-154021318 + Intergenic
ENSMUSG00000084065 UCSC
Rpl7P3 chr3:47654119-47654283 + Intergenic
N/A UCSC
Rpl7P7 chr6:145337178-145337955 + Intragenic
N/A UCSC
Rpl7P11 chr10:102655237-102655823 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011291.5
TTTAAGGAGACAGTGCGCATGCGccacctttctctcttcttttccggCTGGAACCATGGAGGCTGTTCCagagaagaaaaagaaggttgCCACTGTGCCAGGAACCCTTAAGAAAAAGGTTCCTGCTGGGCCAAAAACTCTCAAGAAAAAGGTTCCCGCTGTGCCAGAAACCCTCAAGAAAAAGCGAAGGAATTTCGCAGAGTTGAAGGTGAAGCGCCTGAGGAAGAAGTTTGCCCTGAAGACACTTCGAAAGGCAAGGAGGAAGCTCATCTATGAGAAGGCAAAGCACTATCACAAGGAGTACAGGCAGATGTACCGCACTGAGATTCGGATGGCCAGGATGGCAAGGAAAGCTGGCAACTTCTATGTGCCCGCAGAACCAAAGCTGGCCTTTGTCATCAGAATTCGAGGTATCAATGGAGTAAGCCCAAAGGTTCGTAAGGTTCTGCAGCTCCTTCGTCTTCGACAGATCTTCAATGGCACCTTTGTTAAGCTCAACAAGGCTTCAATTAACATGCTGCGGATTGTGGAGCCATACATTGCATGGGGGtaccccaacctgaagtcagtaaACGAGCTCATCTACAAGCGAGGCTACGGCAAAATCAACAAGAAGCGGATTGCCTTGACAGATAATTCCTTGATTGCTCGGTCTCTTGgtaaGTTTGGCATCATCTGCATGGAGGATCTAATTCATGAGATCTATACAGTCGGGAAACGCTTCAAGGAAGCAAATAACTTCCTGTGGCCCTTCAAGTTATCTTCCCCACGAGGTGGGATGAAGAAAAagacaactcactttgtagaaggtGGAGATGCTGGCAACAGGGAAGACCAGATAAACAGGCTTATTAGACGGATGAACTAAGGTGTCACCCATTGTATTTTTGTAATCTGGTCAGTTAATAAACAGTCACAGCTTGGCAAATTGAAA