Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl9
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L9
Also known as -
Coordinate chr5:65545707-65548774
Strand -
Gene summary Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Part of cytosolic large ribosomal subunit. Is active in synapse. Orthologous to human RPL9 (ribosomal protein L9). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl9

Retroname Coord Strand Genomic Region ENSG
Rpl9P3 chr1:25654029-25654443 - Intragenic
ENSMUSG00000101301 UCSC
Rpl9P1 chr1:111808372-111809064 - Intergenic
ENSMUSG00000101875 UCSC
Rpl9P2 chr1:176166778-176166990 - Intergenic
ENSMUSG00000102446 UCSC
Rpl9P23 chr11:32830272-32830961 - Intergenic
ENSMUSG00000083303 UCSC
Rpl9P24 chr11:46452833-46453524 + Intergenic
ENSMUSG00000082749 UCSC
Rpl9P25 chr11:53391989-53392678 + Intergenic
ENSMUSG00000085718 UCSC
Rpl9P26 chr11:83535781-83536467 - Intergenic
ENSMUSG00000081906 UCSC
Rpl9P27 chr12:83894835-83895075 + Intragenic
ENSMUSG00000113141 UCSC
Rpl9P29 chr13:67022123-67022812 + Intergenic
ENSMUSG00000095847 UCSC
Rpl9P30 chr13:72602791-72603480 - Intergenic
ENSMUSG00000094989 UCSC
Rpl9P28 chr13:118646931-118647100 - Intergenic
ENSMUSG00000114668 UCSC
Rpl9P31 chr14:45950800-45951269 + Intergenic
ENSMUSG00000082475 UCSC
Rpl9P33 chr16:3745509-3746034 + Intragenic
ENSMUSG00000081809 UCSC
Rpl9P34 chr16:37517038-37517730 - Intergenic
ENSMUSG00000116529 UCSC
Rpl9P35 chr16:67389708-67389942 - Intragenic
ENSMUSG00000082823 UCSC
Rpl9P36 chr17:36754978-36755663 - Intergenic
ENSMUSG00000092437 UCSC
Rpl9P5 chr2:26448623-26449207 + Intergenic
ENSMUSG00000082864 UCSC
Rpl9P6 chr2:70289289-70289915 + Intergenic
ENSMUSG00000047965 UCSC
Rpl9P7 chr2:78675416-78676013 - Intergenic
ENSMUSG00000084101 UCSC
Rpl9P4 chr2:156631639-156632291 - Intergenic
ENSMUSG00000082196 UCSC
Rpl9P9 chr3:144331076-144331647 - Intergenic
ENSMUSG00000105045 UCSC
Rpl9P12 chr4:74999676-74999936 - Intergenic
ENSMUSG00000082533 UCSC
Rpl9P10 chr4:101219372-101220114 - Intergenic
ENSMUSG00000083614 UCSC
Rpl9P11 chr4:108308000-108308275 - Intergenic
ENSMUSG00000083255 UCSC
Rpl9P16 chr5:9829534-9829900 + Intergenic
ENSMUSG00000105348 UCSC
Rpl9P15 chr5:93151662-93152357 + Intergenic
ENSMUSG00000106930 UCSC
Rpl9P17 chr6:65859738-65860288 + Intragenic
ENSMUSG00000092394 UCSC
Rpl9P19 chr9:34111823-34112065 + Intergenic
ENSMUSG00000098909 UCSC
Rpl9P20 chr9:51568162-51568845 + Intergenic
ENSMUSG00000110825 UCSC
Rpl9P21 chr9:78296093-78296769 - Intergenic
ENSMUSG00000083032 UCSC
Rpl9P22 chr9:90614992-90615601 - Intergenic
ENSMUSG00000099366 UCSC
Rpl9P42 chrX:22305024-22305679 - Intergenic
ENSMUSG00000085073 UCSC
Rpl9P43 chrX:81486205-81486343 + Intragenic
ENSMUSG00000083877 UCSC
Rpl9P38 chrX:102641466-102642021 + Intergenic
ENSMUSG00000080796 UCSC
Rpl9P39 chrX:119280914-119281363 + Intragenic
ENSMUSG00000081546 UCSC
Rpl9P40 chrX:140085370-140085547 - Intragenic
ENSMUSG00000081029 UCSC
Rpl9P41 chrX:157031771-157032453 + Intergenic
ENSMUSG00000081797 UCSC
Rpl9P37 chr19:32443283-32443975 - Intergenic
ENSMUSG00000062456 UCSC
Rpl9P14 chr5:58057053-58057585 + Intragenic
ENSMUSG00000104564 UCSC
Rpl9P8 chr3:108515138-108515287 - Intragenic
N/A UCSC
Rpl9P13 chr5:143007720-143008629 - Intragenic
N/A UCSC
Rpl9P18 chr8:85581793-85582303 - Intergenic
N/A UCSC
Rpl9P32 chr15:57102244-57102401 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011292.2
GGATTACAAGAACGTGATGACGAAAGACGTTCTCTCTTTGCCCCATCTACTGCGAGGATGAAGACCATTCTCAGCAATCAGACTGTGGACATTCCAGAGAATGTCGAAATCACTCTGAAGGGGCGCACAGTCATTGTGAAGGGCCCCAGGGGGACTCTGCGGAGGGACTTCAATCACATCAACGTGGAGCTGAGTCTtcttgggaagaagaagaaaaggCTCCGGGTTGACAAATGGTGGGGTAACAGAAAGGAACTGGCCACCGTCAGGACCATCTGCAGTCATGTTCAGAACATGATCAAGGGTGTCACGCTGGGCTTCCGATACAAGATGCGGTCTGTGTACGCTCACTTCCCCATCAACGTCGTCATCCAGGAGAATGGCTCTTTGGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTCGGATGAGGACAGGTGTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGAGTTAATCCTTGAAGGAAATGACATTGAACTTGTTTCAAATTCAGCTGCCCTGATTCAGCAAGCCACAAcagttaaaaacaaggatatcaggAAGTTTTTGGACGGCATCTATGTGTCTGAGAAGGGAACTGTGCAGCAGGCTGACGAGTGAGGAGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTGGGAGAATAAAAGACTTATATATTGA