Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps6
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S6
Also known as S6R
Coordinate chr4:86772336-86775604
Strand -
Gene summary Predicted to enable protein kinase binding activity. Predicted to be a structural constituent of ribosome. Involved in glucose homeostasis. Acts upstream of or within several processes, including T cell activation; activation-induced cell death of T cells; and ribosome biogenesis. Located in dendrite; perinuclear region of cytoplasm; and ribosome. Part of cytosolic small ribosomal subunit and polysome. Is expressed in several structures, including early conceptus; forelimb; gonad; intestine epithelium; and salivary gland. Orthologous to human RPS6 (ribosomal protein S6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps6

Retroname Coord Strand Genomic Region ENSG
Rps6P4 chr1:60740775-60741122 + Intergenic
ENSMUSG00000084151 UCSC
Rps6P1 chr1:104560552-104560772 - Intergenic
ENSMUSG00000099801 UCSC
Rps6P2 chr1:107065538-107066340 - Intergenic
ENSMUSG00000083884 UCSC
Rps6P3 chr1:179366074-179366473 + Intragenic
ENSMUSG00000082395 UCSC
Rps6P34 chr10:7482046-7482424 - Intragenic
ENSMUSG00000087350 UCSC
Rps6P33 chr10:65370412-65371222 + Intergenic
ENSMUSG00000112341 UCSC
Rps6P35 chr11:57340021-57340708 + Intergenic
ENSMUSG00000082476 UCSC
Rps6P36 chr11:98076150-98076973 + Intragenic
Intragenic
Intragenic
ENSMUSG00000085897 UCSC
Rps6P38 chr12:56456688-56457139 - Intergenic
ENSMUSG00000112626 UCSC
Rps6P37 chr12:107579322-107580125 + Intergenic
ENSMUSG00000079359 UCSC
Rps6P40 chr14:74033940-74034771 - Intergenic
ENSMUSG00000075581 UCSC
Rps6P41 chr14:79497994-79498230 + Intergenic
ENSMUSG00000115045 UCSC
Rps6P42 chr15:76221775-76222605 + Intergenic
ENSMUSG00000063875 UCSC
Rps6P8 chr2:28683388-28683588 - Intragenic
ENSMUSG00000082796 UCSC
Rps6P9 chr2:75021376-75022198 - Intergenic
ENSMUSG00000081406 UCSC
Rps6P5 chr2:119017974-119018780 + Intragenic
ENSMUSG00000081572 UCSC
Rps6P7 chr2:156475087-156475261 - Intragenic
ENSMUSG00000083498 UCSC
Rps6P11 chr3:32314474-32315292 + Intergenic
ENSMUSG00000103643 UCSC
Rps6P13 chr3:65523243-65523565 - Intergenic
ENSMUSG00000103294 UCSC
Rps6P14 chr3:69967157-69967478 + Intergenic
ENSMUSG00000103020 UCSC
Rps6P10 chr3:151678384-151679019 - Intergenic
ENSMUSG00000104725 UCSC
Rps6P16 chr4:26442559-26443256 + Intergenic
ENSMUSG00000082573 UCSC
Rps6P17 chr4:29195511-29196278 + Intergenic
ENSMUSG00000082486 UCSC
Rps6P18 chr4:39844389-39844626 - Intergenic
ENSMUSG00000082022 UCSC
Rps6P19 chr4:79245903-79246733 + Intergenic
ENSMUSG00000083496 UCSC
Rps6P15 chr4:100218881-100219151 - Intragenic
Intragenic
ENSMUSG00000080967 UCSC
Rps6P20 chr5:10018661-10019444 + Intergenic
ENSMUSG00000106661 UCSC
Rps6P22 chr5:12528801-12529600 - Intragenic
ENSMUSG00000105854 UCSC
Rps6P21 chr5:107389484-107390254 + Intragenic
ENSMUSG00000084218 UCSC
Rps6P26 chr6:49519877-49520702 - Intergenic
ENSMUSG00000108266 UCSC
Rps6P27 chr6:82968186-82968450 - Intragenic
ENSMUSG00000107829 UCSC
Rps6P24 chr6:116450034-116450362 + Intergenic
ENSMUSG00000107914 UCSC
Rps6P25 chr6:129529133-129529347 - Intergenic
ENSMUSG00000108257 UCSC
Rps6P28 chr8:89532986-89533803 + Intergenic
ENSMUSG00000056772 UCSC
Rps6P31 chr9:53600794-53601621 - Intragenic
ENSMUSG00000082465 UCSC
Rps6P32 chr9:71034461-71034648 + Intragenic
ENSMUSG00000111618 UCSC
Rps6P29 chr9:104221336-104221628 - Intergenic
ENSMUSG00000100346 UCSC
Rps6P45 chrX:68648499-68649892 - Intragenic
ENSMUSG00000082926 UCSC
Rps6P46 chrX:84285798-84286339 + Intergenic
ENSMUSG00000082139 UCSC
Rps6P44 chrX:102081220-102082012 + Intergenic
ENSMUSG00000080774 UCSC
Rps6P6 chr2:128007231-128007489 + Intragenic
N/A UCSC
Rps6P12 chr3:64507961-64508424 + Intergenic
N/A UCSC
Rps6P23 chr6:108736011-108736370 - Intragenic
N/A UCSC
Rps6P30 chr9:26847525-26848136 + Intergenic
N/A UCSC
Rps6P39 chr13:51104216-51105046 + Intergenic
N/A UCSC
Rps6P43 chr17:74794224-74795058 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_009096.3
CTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGATGAAGCTGAACATCTCCTTCCCCGCCACCGGCTGTCAGAAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTTCTATGAGAAGCGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAGGGTTATGTGGTCCGGATCAGCGGTGGGAATGACAAGCAAGGTTTTCCCATGAAGCAAGGTGTTCTGACCCATGGCAGAGTGCGCCTGCTGTTGAGTAAGGGGCATTCCTGTTACAGGCCAAGGAGAACTGGAGAGAGGAAGCGCAAGTCTGTTCGTGGATGCATTGTGGACGCTAATCTCAGTGTTCTCAACTTGGTCATTGTAAAGAAAGGAGAGAAGGATATTCCTGGACTGACAGACACTACTGTGCCTCGTCGGTTGGGACCTAAAAGGGCTAGTAGAATCCGCAAGCTTTTTAATCTCTCCAAAGAAGATGATGTCCGCCAGTATGTTGTCAGGAAGCCCTTAAACAAAGAAGgtaagaagcccaggaccaaagcacccaagaTTCAGCGACTTGTTACTCCTCGTGTCCTGCAACACAAACGCCGACGTATTGCTCTGAAGAAGCAACGCACTaagaagaacaaggaggaggCTGCAGAATACGCTAAACTTTtggccaagagaatgaaggaagccaaagaaaagcGCCAGGAACAGATTGCCAAGAGACGTAGGCTGTCCTCACTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAAAAATGAGTCTTTAAGagcaacaaataaataatgacCTTGAATCTTTCATTGGCTTTCATTAATAGTGTAACTAGATAAATGATGGGAAAGATGAGACAGAAGAAGGAATACATCTATAGGACTGCTAGAATATGGGGAGAGTgattattttcaaattaatatGTATCGAGCTTCTACCCCaaggtaaataaataacatttggaGACCATTAAAATGTAGGATGGCATAGAAGAGGCCTTTACTAAGATTAATAATTAAAGAAACACAGCCTTTAAAGTAAAAAACACACTGTGCCTTTGAAACTTGCTAAAAAGATTAACTTCTGTCCCAAAAGGTATCAGCCATGCGCTACCAGCCTCCCTGCCCCTACAGTGGCAGTGGCTGCATTCTTGGTGAATGGTAGTGGAAGGGATTAAACCTAGGCCTCAGTCATGCTTCCCAGTCACTGGTACTGATTTGTATGCACCCGCTTAGGTGTGAAGGTAGTTTTGGTGTGTATCACAAGTTAGCCTGTGTAGCgaagacaggttttctccacCGTGTTTTTTGTTACACATGACTATTCACAAATGTGCTGCAGACAGTAAAATGAGAAATACCCTTCCAAGG