Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Tyms
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name thymidylate synthase
Also known as Ts
Coordinate chr5:30263173-30279261
Strand -
Gene summary This gene encodes an enzyme that catalyzes the methylation of deoxyuridylate to deoxythymidylate using 5,10-methylenetetrahydrofolate as a cofactor. This function maintains the thymidine-5-prime monophosphate concentration critical for DNA replication and repair. The encoded enzyme is a target for cancer chemotherapeutic agents. The majority of transcripts for this gene lack a 3' UTR (PMID: 3022294, 3444407). The stop codon in these transcripts is UAA, compared to the UAG found in the genome and longer transcripts, as the polyA site is located within the stop codon (PMID: 3444407, 2157203). A related pseudogene has been identified on chromosome 10. [provided by RefSeq, Mar 2010]

Retrocopy(s) from Tyms

Retroname Coord Strand Genomic Region ENSG
TymsP1 chr10:87802740-87805331 + Intergenic
ENSMUSG00000112222 UCSC

Expression

Transcript Sequences

>NM_021288.4
GGGCTGGTGTTGGAGGAAAAGAGCGCCAGGAAGGTCCTGGTTTTGTCGCTGACTACACTGCTGCCAGACTGCTCCGTTATGCTGGTGGTTGGCTCCGAGCTGCAGTCCGATGCTCAGCAGCTGAGCGCGGAAGCCCCACGGCATGGAGAACTCCAGTACCTGAGGCAGGTGGAGCACATTTTGCGCTGCGGCTTCAAGAAGGAGGACCGCACGGGCACTGGCACCCTGTCGGTGTTCGGCATGCAGGCACGATACAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGgGATCCACAAATGCTAAAGAATTGTCCTCAAAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGATTTTCTGGACAGCTTGGGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGATATGGATTCAGATTACTCGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAGCCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCAGctaCAGCGAGAACCAAGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACAATCGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAAAATGGAAATGGCTGTTTAGAGTGCTTTCAGTGATGCTATGAATatcaccgtttttttttttttaattaggtattttcctcatttacatttccaatgctataccaaaagtcccccataccctcccctccactcccctacccacccactcccacttcttggccctggcattcccttgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagtcaagagctccggggtactggttagttcataatgttgttccacctatagggttgcagatccctttagctccttgggtactttctctagctcctccattgggggccctgtgatccatccaatagctgacagtgagcatccacttctgtgtacaCCTCCAAGAGTAGCCATTACAGTCACTCATGGAGTAGCGTACGAAGTACTTCAGGTAGAAGCACTTGCAGTCCCTCAAGGCAGAACCCTCGAAGTCCTTCAAGGATGAGCCCTCACATTCCCTCATAGAGGATTCTATGCAGTCCCTCAAGGAGGAGCCCTCACAGTCACTCAATGACCACACACAGTCCATCAAGGAAAAGTCCTCGCAGTCGTTCAAGGAGGAACCCTCTAAGTCCTTCAAGGATGAGCCCTCACAGTCCCTCATGGAGGACCCCATGCAGTCCCTCAAGGAGGAGCCCTCACAGTTACTCAAGGACCCAACACAGCCCATCAAGGAGAAGTCTTTGTAGTTCCTCAATGTGGAACCCACAAAGTCCTTCAGGATGAGCCCTCACAGTTCCTCATGGAGGACCTCTTGTAGTCACTCAAGGAGGAGCCCTCACAGTCACTTAAGCACCCCACACAGCACATCAAGGAGAAGTCCACCCAGTCCTTCCAGAAGGAACCCTCGAAGTCCTTCAAGTATGAGCCCTCACAGTCCCTCATGGAGGACCCCATGCAGTAACTTGTTGTGAGCCAGCTCATGGCTCACATGGACagggtacacctgagtggcaggccagggctgaaagagaggggaactaggtggtcgagagaaaaatggagctaagtcaagattcctgatcaaagctcaaatgtttaatggcacatgctcttataaaggggggagggggaggcccattcccgccaattcattctAGGAGCCCAGCTGCAGTTGACGACGTGCAGGATAGGGTGAAGTTCCAGAATAGCTCAGcagcctcccagcaggtagcagcatctTGAAGGGGAACAGTGGCAGTGGCTGagcaatagagtgatctagggaggaaggctccaccctaggtaatctccttagtggcagaaaGGTCAatgtctggctcagcctgcttcaggctgggggaggttacaatttcctccgttattaatattaaataagctggactgaggcataaaatttatgctctatagttctgcctgatttctttgggtctagtgaagaaacctgtctcagtgggattccctaactttttctCATTGTAAACCCACCTATTCGCTAGGCCATGGTGAATAcccttgtctgggtaagactggctactgtcccaaGTAAATACtctgtagactagccctgagctattctatctcattctttgtaatgcctaattagtttcattgTCTCTTCCAAGCTCCTCGGCTTCAAgcattttctaggacattggaacagtggccaaggcttagctatgtcagaattcaatcttaaaaggcacttataataagataatactaaaagagagcacgtggagccatacaccagactaacgtggggatagggtatgagtatacaggttatgagaacactaaagttccaggaggtgagtttctgtgaaaaactctgcctcgtgagtgctcccaggcacctctgcctgccaagcaaacttcactgtaGTGTGTGTAGcattctccccctttctttttatattcagGAGTGCTCTAAACACAACGATTTACTAATAGAATAGTGCCAATAATAGCAAGTTGAATATATATATCTCCCAATCTAGGagattcaatgcacttaggttttttttgtttgtttgtttgttttgttttttatctctggccaattcatcaatgttccaagtgtccaagtgacttttgctaatatctgaaacttctgcctttctagccttaatatatGCTATGTCCTGCCCTGTTGTTAAGACTGCTACTtataagacattaacctttgcctccaatttttttacatggctctgtggtgtattattagtaaaccacggcctcttggcatgtGCCTCTTTTTAGACTGATATGATTCCGAGATCTGGATGCCCGTCTTAGACTGTCTGGCCCTCATAGCAAACCTTATTCCCGATTCAGACCAAaaccacaatatgtacttagaatgcttcttCATGAAGatttaataactgccacctgtgcTGTTGGAGGTGAGGGTGCACACCTGCTGCAGTAAGGATGAAGGGCaggactgacctgcttgaaaaacaaagtggagacagtgaaaagcaacagtacaaaagcttctttgggggaagtccaggtactccattcaattgcaaattagcaatggtCATGCTTAGACTTAGAGCTCCCGTTGTGGGGAGGTGACTTCGAGAATCACAGAAAGGCTGTAACTTTCTAGgagaggaggctgtgctccaaattaacttttcggTTAAAGAGGATTTTTAGCTTTAATAAGAGTCATACTTACTGGAGGATTCAGGATCTTTATCCAGTTGACAAACTAATCTTTCAGGCAGGCAGCCATcctgctccatcttctttttgtg