Retrocopy Name | TymsP1 |
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Species | Mus musculus | |
Coordinates | chr10:87802740-87805331 UCSC | |
Strand | + | |
Parental Sequence | NM_021288.4 | |
Parental seq. overlap | 1273 bp | |
Parental seq. overlap (%) | 33.4% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | TymsP1, located on chr10:87802740-87805331, is a retrocopy of the parental gene Tyms. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Tyms |
Full Name | thymidylate synthase |
Also known as | Ts |
Coordinate | chr5:30263173-30279261 |
Strand | - |
Gene summary | This gene encodes an enzyme that catalyzes the methylation of deoxyuridylate to deoxythymidylate using 5,10-methylenetetrahydrofolate as a cofactor. This function maintains the thymidine-5-prime monophosphate concentration critical for DNA replication and repair. The encoded enzyme is a target for cancer chemotherapeutic agents. The majority of transcripts for this gene lack a 3' UTR (PMID: 3022294, 3444407). The stop codon in these transcripts is UAA, compared to the UAG found in the genome and longer transcripts, as the polyA site is located within the stop codon (PMID: 3444407, 2157203). A related pseudogene has been identified on chromosome 10. [provided by RefSeq, Mar 2010] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>TymsP1 |
CGCTGGGCGCGGAAGCCCCGGGGCATGGAGAACTCCAGTACCTGAGGCAGGTGGAGCACATTTTGTGCTGCGGCTTCAAGAAGGAGGACCGCATGGGCACTGGCACCCTGTAGGTGTTCGGCATGCAGGCACGATCCAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAAGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCCAAGGGAGTGAGAATCTGGGATGCTAATAGATCCCGAGACTTTCTGGACAGCTTGGGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGACATGGATTCAGATTACTCAGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATATGGTGAATGGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCAGCTATGTTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAGACATTTTTAGCCAGGTGATTTTGTCCACAATTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCAGCTACAGCGAGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGGTGAGACAATCGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAAAATGGAGATAGCTGTTTAGAGAGCTTTCAGTGATGCTGTGAATATCGacgtacaCCTCCAAGTGTAGCCATTGCAGTCGCTCATGGAGTAGCCTATGAAGTACTTCAGGTAGAAGCACTCGCAGTCCCTCAAGGCAGAACCCTTGAAGTCCTTCAAGGATGAGCCCTCACAGTCCCTCATGGAGGACTCTATGCAGTCCCTCAAGGAGGAGCCCTCACAGTTACTCAAGGGCCCCACACAGCCCATCAAGGAGAAGCCCTCATAGTCCCTCAATGTGGAACCCACAAAGTCCTTCAGGATGAACCCTCACAGTTCCTCATAATGGATCCCATGCAGTCCTTCAAGGAGGTGCCCTCACAGTCACTCAAGGACACCACACAGCCCATCAAGAAGTCCTCTCAGTCCTTCAAGAAGGAGCCCTCGAAGTCCTTCAAAGGATGAGCCCTCACAGTCCCTCATGGAGGACCCCATGCAGTAACTT |
>NM_021288.4 |
GGGCTGGTGTTGGAGGAAAAGAGCGCCAGGAAGGTCCTGGTTTTGTCGCTGACTACACTGCTGCCAGACTGCTCCGTTATGCTGGTGGTTGGCTCCGAGCTGCAGTCCGATGCTCAGCAGCTGAGCGCGGAAGCCCCACGGCATGGAGAACTCCAGTACCTGAGGCAGGTGGAGCACATTTTGCGCTGCGGCTTCAAGAAGGAGGACCGCACGGGCACTGGCACCCTGTCGGTGTTCGGCATGCAGGCACGATACAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGgGATCCACAAATGCTAAAGAATTGTCCTCAAAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGATTTTCTGGACAGCTTGGGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGATATGGATTCAGATTACTCGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAGCCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCAGctaCAGCGAGAACCAAGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACAATCGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAAAATGGAAATGGCTGTTTAGAGTGCTTTCAGTGATGCTATGAATatcaccgtttttttttttttaattaggtattttcctcatttacatttccaatgctataccaaaagtcccccataccctcccctccactcccctacccacccactcccacttcttggccctggcattcccttgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagtcaagagctccggggtactggttagttcataatgttgttccacctatagggttgcagatccctttagctccttgggtactttctctagctcctccattgggggccctgtgatccatccaatagctgacagtgagcatccacttctgtgtacaCCTCCAAGAGTAGCCATTACAGTCACTCATGGAGTAGCGTACGAAGTACTTCAGGTAGAAGCACTTGCAGTCCCTCAAGGCAGAACCCTCGAAGTCCTTCAAGGATGAGCCCTCACATTCCCTCATAGAGGATTCTATGCAGTCCCTCAAGGAGGAGCCCTCACAGTCACTCAATGACCACACACAGTCCATCAAGGAAAAGTCCTCGCAGTCGTTCAAGGAGGAACCCTCTAAGTCCTTCAAGGATGAGCCCTCACAGTCCCTCATGGAGGACCCCATGCAGTCCCTCAAGGAGGAGCCCTCACAGTTACTCAAGGACCCAACACAGCCCATCAAGGAGAAGTCTTTGTAGTTCCTCAATGTGGAACCCACAAAGTCCTTCAGGATGAGCCCTCACAGTTCCTCATGGAGGACCTCTTGTAGTCACTCAAGGAGGAGCCCTCACAGTCACTTAAGCACCCCACACAGCACATCAAGGAGAAGTCCACCCAGTCCTTCCAGAAGGAACCCTCGAAGTCCTTCAAGTATGAGCCCTCACAGTCCCTCATGGAGGACCCCATGCAGTAACTTGTTGTGAGCCAGCTCATGGCTCACATGGACagggtacacctgagtggcaggccagggctgaaagagaggggaactaggtggtcgagagaaaaatggagctaagtcaagattcctgatcaaagctcaaatgtttaatggcacatgctcttataaaggggggagggggaggcccattcccgccaattcattctAGGAGCCCAGCTGCAGTTGACGACGTGCAGGATAGGGTGAAGTTCCAGAATAGCTCAGcagcctcccagcaggtagcagcatctTGAAGGGGAACAGTGGCAGTGGCTGagcaatagagtgatctagggaggaaggctccaccctaggtaatctccttagtggcagaaaGGTCAatgtctggctcagcctgcttcaggctgggggaggttacaatttcctccgttattaatattaaataagctggactgaggcataaaatttatgctctatagttctgcctgatttctttgggtctagtgaagaaacctgtctcagtgggattccctaactttttctCATTGTAAACCCACCTATTCGCTAGGCCATGGTGAATAcccttgtctgggtaagactggctactgtcccaaGTAAATACtctgtagactagccctgagctattctatctcattctttgtaatgcctaattagtttcattgTCTCTTCCAAGCTCCTCGGCTTCAAgcattttctaggacattggaacagtggccaaggcttagctatgtcagaattcaatcttaaaaggcacttataataagataatactaaaagagagcacgtggagccatacaccagactaacgtggggatagggtatgagtatacaggttatgagaacactaaagttccaggaggtgagtttctgtgaaaaactctgcctcgtgagtgctcccaggcacctctgcctgccaagcaaacttcactgtaGTGTGTGTAGcattctccccctttctttttatattcagGAGTGCTCTAAACACAACGATTTACTAATAGAATAGTGCCAATAATAGCAAGTTGAATATATATATCTCCCAATCTAGGagattcaatgcacttaggttttttttgtttgtttgtttgttttgttttttatctctggccaattcatcaatgttccaagtgtccaagtgacttttgctaatatctgaaacttctgcctttctagccttaatatatGCTATGTCCTGCCCTGTTGTTAAGACTGCTACTtataagacattaacctttgcctccaatttttttacatggctctgtggtgtattattagtaaaccacggcctcttggcatgtGCCTCTTTTTAGACTGATATGATTCCGAGATCTGGATGCCCGTCTTAGACTGTCTGGCCCTCATAGCAAACCTTATTCCCGATTCAGACCAAaaccacaatatgtacttagaatgcttcttCATGAAGatttaataactgccacctgtgcTGTTGGAGGTGAGGGTGCACACCTGCTGCAGTAAGGATGAAGGGCaggactgacctgcttgaaaaacaaagtggagacagtgaaaagcaacagtacaaaagcttctttgggggaagtccaggtactccattcaattgcaaattagcaatggtCATGCTTAGACTTAGAGCTCCCGTTGTGGGGAGGTGACTTCGAGAATCACAGAAAGGCTGTAACTTTCTAGgagaggaggctgtgctccaaattaacttttcggTTAAAGAGGATTTTTAGCTTTAATAAGAGTCATACTTACTGGAGGATTCAGGATCTTTATCCAGTTGACAAACTAATCTTTCAGGCAGGCAGCCATcctgctccatcttctttttgtg |
PMID - Link | Title |
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