Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Ubb
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ubiquitin B
Also known as Rps27a|Uba52|Ubb2|Ubc
Coordinate chr11:62441997-62444039
Strand +
Gene summary This gene encodes ubiquitin, one of the most conserved proteins known. Ubiquitin has a major role in targeting cellular proteins for degradation by the 26S proteosome. It is also involved in the maintenance of chromatin structure, the regulation of gene expression, and the stress response. Ubiquitin is synthesized as a precursor protein consisting of either polyubiquitin chains or a single ubiquitin moiety fused to an unrelated protein. This gene consists of four direct repeats of the ubiquitin coding sequence with no spacer sequence. Consequently, the protein is expressed as a polyubiquitin precursor with a final amino acid after the last repeat. Pseudogenes of this gene are located on chromosomes 3 and 14. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

Retrocopy(s) from Ubb

Retroname Coord Strand Genomic Region ENSG
UbbP2 chr11:63131962-63132335 - Intergenic
ENSMUSG00000083052 UCSC
UbbP3 chr19:5308750-5308972 + Intragenic
ENSMUSG00000118104 UCSC
UbbP1 chr6:60438738-60439194 - Intergenic
ENSMUSG00000107863 UCSC
UbbP4 chrX:16245767-16245956 - Intergenic
ENSMUSG00000083551 UCSC

Expression

Transcript Sequences

>NM_011664.4
CTTTGACTCCTCACCAATCAGCGCTGGCGCCGCAAGGAGGTTTCCAGAGCTTTCGAGGGAGGGCCCTTTAACTTGGATTCATCCGCGTGatgattttttcaattttttgcaCGAGAGGAGACGAGACGCCGGGAATACAGTGTCTCTCGTTTGGTAGTACTCTTTTCTTTGGTTCTGAAGAATCGGGAGCTCGGCAAAAACGCCTAATTGGTCTGGGGGAGGTGGGGGCCCGCGGAACTACTTTCGGTGGCGCAGGAAGACAACAGCTACGTAGGAGTGAGCAGTCACGCAACAGACGCTGCATAAATAGCGGCTCGCGCGGCCACTGAGCTCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTctttctgtgagggtgtttcgaCGCGCTGGGCGGTTTGTGCTTTCATCACATTTGTTAACAGGTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGTCAACCCTGCACCTGGTCCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGTCAACCCTGCACCTGGTCCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCTATTAATTATTCGGTCTGCATTCCCAGTGGGCAGTGATGGCATTACTCTGCACTCTAGCCACTTGCCCCAATTTAAGTTTAGAAATTACAAGTTTCAATAATAGCTGAACCTCTGttaaaaaatgttaataaagGTTTTGTTGCATGGTAAGCATA