Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name LDHB
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Bos taurus
Full Name lactate dehydrogenase B
Also known as -
Coordinate chr5:88544523-88562770
Strand +
Gene summary This gene encodes the B subunit of lactate dehydrogenase enzyme, which catalyzes the interconversion of pyruvate and lactate with concomitant interconversion of NADH and NAD+ in a post-glycolysis process. Recent studies have shown that two protein isoforms are produced from the same mRNA by use of alternative in-frame translation termination codons via a stop codon readthrough mechanism, and that these C-terminally distinct isoforms have different subcellular localization. Pseudogenes have been identified on chromosomes 1 and 11. [provided by RefSeq, Oct 2015]

Retrocopy(s) from LDHB

Retroname Coord Strand Genomic Region ENSG
LDHBP2 chr3:33600345-33601125 + Intergenic
 N/A UCSC
LDHBP3 chr11:78121181-78122294 - Intragenic
 N/A UCSC
LDHBP1 chr1:83709827-83711109 - Intragenic
 ENSBTAG00000032217 UCSC
LDHBP4 chr16:44918496-44918709 + Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001316338.1
GAAGCTCGGAGGCGGCCAAGGGGCGGGTCCCGCCTGCTCTTCCTCCCTCCTTGCGGATCCTGCGCCGGAGGAGACGCACGCTGCTGACTTTGTCTTCGTGCAGCCCTTATCACTCTCTGGAGAACTTTCTCTCCCCTGGGCACAATGGCAACTCTTAAGGAAAAATTGATTGCACCAGTTGCAGAAGAAGAGACAAGGATCCCAAACAATAAGATCACTGTAGTGGGTGTTGGACAAGTTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGACTGACGAGCTTGCTCTTGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGACCTGCAGCACGGGAGCTTATTCCTTCAGACACCAAAAATTGTGGCAGACAAAGATTACTCTGTCACTGCCAATTCCAAGATTGTGGTGGTAACTGCAGGAGTTCGCCAGCAAGAAGGGGAGAGTCGCCTGAATTTGGTGCAAAGGAACGTTAACGTCTTCAAGTTCATCATTCCTCAGATCGTCAAGTACAGTCCTGACTGCATCATCATTGTGGTTTCCAACCCAGTGGATATTCTCACATATGTTACCTGGAAACTAAGTGGATTACCCAAGCACCGTGTGATTGGGAGTGGATGTAACCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCACGGATGGATTTTGGGGGAACATGGCGACTCAAGCGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGCGTTTCTCTCCAGGAACTGAATCCAGAAATGGGAACAGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAGAGTGCCTATGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAATCTATCGAGGATTCACCCAGTGTCAACAATGGTGAAGGGCATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCGTGTATCCTGAATGCTCGAGGGTTAACCAGTGTTATCAACCAGAAGCTGAAGGATGAAGAGGTTGCTCAACTCAAGAAAAGTGCAGACACCCTCTGGGGCATCCAAAAGGACCTGAAGGACCTGTGACTTCCGGCTGCAAGGCTGTAGACACTTAGAACTACAGTGTGATTAACCACAAGCCTTTAGTTTGCATCCATGTACATGGAGCACAGTTCGCTTTTGTCTTCCTAAGTCTGTGAATCTGGGCTCCCAGAATCAAAGCCCATGCTTGCTTTAATGCTTGCAAGATGAGTCCTTGAACAAATCAAATAAACCACCTAGTGTAGTGTG
>NM_174100.2
GAAGCTCGGAGGCGGCCAAGGGGCGGGTCCCGCCTGCTCTTCCTCCCTCCTTGCGGATCCTGCGCCGGAGGAGACGCACGCTGCTGACTTTGTCTTCGTGCAGCCCTTATCACTCTCTGGAGAACTTTCTCTCCCCTGGGCACAATGGCAACTCTTAAGGAAAAATTGATTGCACCAGTTGCAGAAGAAGAGACAAGGATCCCAAACAATAAGATCACTGTAGTGGGTGTTGGACAAGTTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGACTGACGAGCTTGCTCTTGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGACCTGCAGCACGGGAGCTTATTCCTTCAGACACCAAAAATTGTGGCAGACAAAGATTACTCTGTCACTGCCAATTCCAAGATTGTGGTGGTAACTGCAGGAGTTCGCCAGCAAGAAGGGGAGAGTCGCCTGAATTTGGTGCAAAGGAACGTTAACGTCTTCAAGTTCATCATTCCTCAGATCGTCAAGTACAGTCCTGACTGCATCATCATTGTGGTTTCCAACCCAGTGGATATTCTCACATATGTTACCTGGAAACTAAGTGGATTACCCAAGCACCGTGTGATTGGGAGTGGATGTAACCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCACGGATGGATTTTGGGGGAACATGGCGACTCAAGCGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGCGTTTCTCTCCAGGAACTGAATCCAGAAATGGGAACAGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAGAGTGCCTATGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAATCTATCGAGGATTCACCCAGTGTCAACAATGGTGAAGGGCATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCGTGTATCCTGAATGCTCGAGGGTTAACCAGTGTTATCAACCAGAAGCTGAAGGATGAAGAGGTTGCTCAACTCAAGAAAAGTGCAGACACCCTCTGGGGCATCCAAAAGGACCTGAAGGACCTGTGACTTCCGGCTGCAAGGCTGTAGACACTTAGAACTACAGTGTGATTAACCACAAGCCTTTAGTTTGCATCCATGTACATGGAGCACAGTTCGCTTTTGTCTTCCTAAGTCTGTGAATCTGGGCTCCCAGAATCAAAGCCCATGCTTGCTTTAATGCTTGCAAGATGAGTCCTTGAACAAATCAAATAAACCACCTAGTGTAGTGTG