Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Cwc15
Plot displaying the genomic locations of a parental gene (in chr8) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name CWC15 spliceosome-associated protein
Also known as RGD1310669
Coordinate chr8:12994131-13004958
Strand +
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to be located in mitochondrion and nuclear speck. Predicted to be part of U2-type catalytic step 2 spliceosome. Orthologous to human CWC15 (CWC15 spliceosome associated protein homolog). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cwc15

Retroname Coord Strand Genomic Region ENSG
Cwc15P1 chr1:126653434-126654224 + Intergenic
 N/A UCSC
Cwc15P3 chr7:38478035-38478196 + Intergenic
 N/A UCSC
Cwc15P4 chr7:99926061-99926203 + Intergenic
 N/A UCSC
Cwc15P2 chr2:77783806-77784606 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001024987.1
CAGGTGTAGAGACTGGAAGTTCTGCATTTTGCTTCCGGTTTTGCGCAGAGATTTCTGGGAGTTAAGGGTCGCAATGGTTCGTGAGTGAGCTTCTGAAGGCACTGCGTCGAACCCCCGCCACAAAGATGACAACAGCAGCCAGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAAAAGGAGAAGGTGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGACCTTCCCTCTCATACAAAGATAAAGTACAGACAAACCACACAGGATGCCCCTGAAGAGGTTCGCAACCGTGACTTCAGGAGAGAGTTGGAAGAGAGGGAGAGAGCTGCTGCAAGGGAGAAAAATAGGGACCGTCCAACCCGAGAACACACAACTTCCTCTTCGGTGTCCAAGAAGCCCCGCTTAGACCAGATTCCTGCTGCCAACCTTGATGCTGACGATCCTCTCACAGATgaggaagatgaggattttgaagaggaaagcgatgacgatgaCACTGCAGCTCTTCTTGCAGAGCTAGAAAAGATCAAGAAGGAGAGAGCTGAAGAGCAGGCCAGAAAGGAGCAAGAACAAAAAGCAGAGGAAGAGAGAATTCGCATGGAAAACATTCTGAGTGGAAACCCTCTCCTGAATCTCACGGGCCCGTCCCAGCCTCAGGCCAACTTCAAGGTTAAAAGAAGGTGGGACGATGATGTTGTTTTTAAGAACTGTGCAAAGGGTATAGATGATCAAAAGAAAGACAAAAGATTTGTAAACGATACGCTGCGATCTGAATTTCACAAAAAGTTCATGGAGAAATATATCAAGTAGTACAGTTTTATGTGCTTAATTAAAGACTAAAGTGTCCAGGATCCATTTGATGTTTGGTTTTGTTCTTTCCCAGCTCTGACTTTCTCAATCCCTTCCCTAAGTGTCGTACTTTACTGGATAATGGGTTTAGAAATGGGTTGAgggctggagagatggcttagcggttaagagcacccgactgctcttccagaggtcatgagttcaattcccagcaaccacatggtggctcacaaccatctgtaaagagatccgatgccctcttctggtgtatctgaagacagctacagtgtactcatatataataaataataaatctttaaaaaaaaaaAAGAAAGAAATGGGTTGAACCAGGCCTTAGTTTCTTTTTAATATGGGGAAAGGGGAAATCTGCTTGTGATAAATATTTTTAACCTAAATCATTGTCCCCAACTTTTTGCTATAATTTATACAGCTTATAAAAAGTTGCATAACTCTTTTCAAAATGAAAATTATCTTTGTGTGCTGTGTTTTTAATACATTAAGTTTTCTCCTTTA
>XM_006242520.3
TGCTTCCGGGTCTTAGTTGAGTCCCAGGTGTAGAGACTGGAAGTTCTGCATTTTGCTTCCGGTTTTGCGCAGAGATTTCTGGGAGTTAAGGGTCGCAATGGTTCGTGAGTGAGCTTCTGAAGGCACTGCGTCGAACCCCCGCCACAAATAGAAGATGACAACAGCAGCCAGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAAAAGGAGAAGGTGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGACCTTCCCTCTCATACAAAGATAAAGTACAGACAAACCACACAGGATGCCCCTGAAGAGGTTCGCAACCGTGACTTCAGGAGAGAGTTGGAAGAGAGGGAGAGAGCTGCTGCAAGGGAGAAAAATAGGGACCGTCCAACCCGAGAACACACAACTTCCTCTTCGGTGTCCAAGAAGCCCCGCTTAGACCAGATTCCTGCTGCCAACCTTGATGCTGACGATCCTCTCACAGATgaggaagatgaggattttgaagaggaaagcgatgacgatgaCACTGCAGCTCTTCTTGCAGAGCTAGAAAAGATCAAGAAGGAGAGAGCTGAAGAGCAGGCCAGAAAGGAGCAAGAACAAAAAGCAGAGGAAGAGAGAATTCGCATGGAAAACATTCTGAGTGGAAACCCTCTCCTGAATCTCACGGGCCCGTCCCAGCCTCAGGCCAACTTCAAGGTTAAAAGAAGGTGGGACGATGATGTTGTTTTTAAGAACTGTGCAAAGGGTATAGATGATCAAAAGAAAGACAAAAGATTTGTAAACGATACGCTGCGATCTGAATTTCACAAAAAGTTCATGGAGAAATATATCAAGTAGTACAGTTTTATGTGCTTAATTAAAGACTAAAGTGTCCAGGATC