Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPSA
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein SA
Also known as 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40
Coordinate chr3:39406720-39412542
Strand +
Gene summary Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Many of the effects of laminin are mediated through interactions with cell surface receptors. These receptors include members of the integrin family, as well as non-integrin laminin-binding proteins. This gene encodes a high-affinity, non-integrin family, laminin receptor 1. This receptor has been variously called 67 kD laminin receptor, 37 kD laminin receptor precursor (37LRP) and p40 ribosome-associated protein. The amino acid sequence of laminin receptor 1 is highly conserved through evolution, suggesting a key biological function. It has been observed that the level of the laminin receptor transcript is higher in colon carcinoma tissue and lung cancer cell line than their normal counterparts. Also, there is a correlation between the upregulation of this polypeptide in cancer cells and their invasive and metastatic phenotype. Multiple copies of this gene exist, however, most of them are pseudogenes thought to have arisen from retropositional events. Two alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPSA

Retroname Coord Strand Genomic Region ENSG
RPSAP7 chr10:14723107-14724131 - Intragenic
ENSG00000237032 UCSC
RPSAP10 chr10:28436140-28437151 + Intergenic
ENSG00000224439 UCSC
RPSAP6 chr10:74371478-74372480 + Intragenic
ENSG00000214629 UCSC
RPSAP17 chr1:154378125-154379148 - Intergenic
ENSG00000226855 UCSC
RPSAP18 chr1:160266268-160267303 - Intergenic
ENSG00000224261 UCSC
RPSAP21 chr1:236819575-236820586 + Intragenic
ENSG00000226498 UCSC
RPSAP52 chr12:65758047-65759074 - Intergenic
ENSG00000241749 UCSC
RPSAP51 chr12:8742464-8743072 + Intragenic
ENSG00000244131 UCSC
RPSAP53 chr13:67266754-67267780 - Intergenic
ENSG00000214263 UCSC
RPSAP13 chr14:55004754-55005730 - Intragenic
ENSG00000233924 UCSC
RPSAP4 chr14:94726211-94727241 + Intergenic
ENSG00000239269 UCSC
RPSAP55 chr15:52885533-52886542 + Intergenic
ENSG00000214896 UCSC
RPSAP20 chr1:56207500-56208516 - Intergenic
ENSG00000229871 UCSC
RPSAP65 chr1:63262085-63262692 + Intergenic
ENSG00000223683 UCSC
RPSAP56 chr16:73940570-73941602 - Intergenic
ENSG00000284670 UCSC
RPSAP66 chr17:60564749-60565564 - Intergenic
ENSG00000266943 UCSC
RPSAP1 chr20:51130711-51131743 - Intergenic
ENSG00000228820 UCSC
RPSAP23 chr2:115468018-115468953 + Intragenic
ENSG00000230391 UCSC
RPSAP24 chr2:174042965-174043911 + Intergenic
ENSG00000235414 UCSC
RPSAP27 chr2:208208556-208209050 + Intergenic
ENSG00000233869 UCSC
RPSAP26 chr2:62146307-62147326 + Intergenic
ENSG00000242735 UCSC
RPSAP28 chr2:73369958-73370963 + Intergenic
ENSG00000214484 UCSC
RPSAP33 chr3:168666499-168667493 + Intergenic
ENSG00000226765 UCSC
RPSAP11 chr3:32190685-32191697 + Intergenic
ENSG00000237433 UCSC
RPSAP32 chr3:617788-618357 - Intergenic
ENSG00000238075 UCSC
RPSAP36 chr4:143424975-143425966 + Intragenic
Intragenic
ENSG00000243175 UCSC
RPSAP39 chr4:80161052-80162081 + Intergenic
ENSG00000244002 UCSC
RPSAP37 chr5:125966773-125967188 - Intergenic
ENSG00000241888 UCSC
RPSAP38 chr5:41951239-41952216 - Intragenic
ENSG00000239694 UCSC
RPSAP45 chr6:112355852-112356778 - Intergenic
ENSG00000219773 UCSC
RPSAP43 chr6:114084097-114084791 - Intragenic
Intragenic
ENSG00000216471 UCSC
RPSAP40 chr6:148647630-148648652 - Intergenic
ENSG00000231368 UCSC
RPSAP2 chr6:28731938-28732974 + Intergenic
ENSG00000237425 UCSC
RPSAP44 chr6:54624544-54625523 + Intergenic
ENSG00000220773 UCSC
RPSAP47 chr8:80558800-80559827 + Intergenic
ENSG00000188856 UCSC
RPSAP49 chr9:88324395-88325410 + Intergenic
ENSG00000226327 UCSC
RPSAP63 chrX:133762734-133763753 + Intragenic
ENSG00000233260 UCSC
RPSAP60 chrX:152045291-152046262 - Intergenic
ENSG00000228965 UCSC
RPSAP19 chr1:101786265-101787298 - Intergenic
ENSG00000183298 UCSC
RPSAP50 chr11:109982290-109983114 + Intergenic
ENSG00000224776 UCSC
RPSAP16 chr1:179968685-179969581 + Intragenic
ENSG00000235145 UCSC
RPSAP12 chr12:68552924-68553958 - Intergenic
ENSG00000240087 UCSC
RPSAP54 chr13:20961233-20962268 + Intergenic
ENSG00000213621 UCSC
RPSAP5 chr14:103373962-103374992 - Intergenic
ENSG00000243904 UCSC
RPSAP3 chr14:76634704-76635737 - Intergenic
ENSG00000242952 UCSC
RPSAP57 chr18:54745125-54745656 + Intragenic
ENSG00000267524 UCSC
RPSAP78 chr19:23827083-23828119 + Intergenic
N/A UCSC
RPSAP25 chr2:176242034-176243070 + Intergenic
ENSG00000230384 UCSC
RPSAP68 chr21:8603415-8603981 + Intergenic
ENSG00000279990 UCSC
RPSAP79 chr22:10580413-10580979 + Intergenic
N/A UCSC
RPSAP22 chr2:85490853-85491817 - Intergenic
ENSG00000229648 UCSC
RPSAP29 chr3:110682215-110683230 - Intergenic
ENSG00000244722 UCSC
RPSAP31 chr3:183887530-183888519 + Intergenic
ENSG00000234371 UCSC
RPSAP69 chr3:196986608-196987634 - Intergenic
ENSG00000233487 UCSC
RPSAP70 chr4:186157890-186158913 + Intragenic
ENSG00000250327 UCSC
RPSAP42 chr6:137995225-137996216 + Intergenic
ENSG00000219463 UCSC
RPSAP41 chr6:73290548-73290978 + Intragenic
ENSG00000239626 UCSC
RPSAP46 chr7:101203610-101204556 - Intergenic
ENSG00000213394 UCSC
RPSAP73 chr7:6365459-6365770 + Intergenic
ENSG00000274319 UCSC
RPSAP48 chr8:110105340-110106001 - Intergenic
ENSG00000240590 UCSC
RPSAP74 chr8:89243323-89243794 - Intergenic
ENSG00000253621 UCSC
RPSAP76 chr9:125194647-125195891 - Intergenic
ENSG00000235332 UCSC
RPSAP75 chr9:74804477-74804843 + Intragenic
ENSG00000270954 UCSC
RPSAP9 chr9:76398622-76399652 + Intergenic
ENSG00000234618 UCSC
RPSAP8 chrX:100155816-100156843 - Intergenic
ENSG00000230592 UCSC
RPSAP59 chrX:103205938-103206945 - Intergenic
ENSG00000233071 UCSC
RPSAP61 chrX:44741010-44742034 + Intergenic
ENSG00000214016 UCSC
RPSAP62 chrX:53323128-53323843 + Intergenic
ENSG00000226299 UCSC
RPSAP14 chrX:74031460-74031839 + Intergenic
ENSG00000233984 UCSC
RPSAP15 chrX:87703272-87704298 - Intergenic
ENSG00000237506 UCSC

Expression

Transcript Sequences

>NM_001304288.2
CTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGCGTTGTTCTGGATTCCCGTCGTAACTTAAAGGGAAATTTTCACAATGTCCggagcccttgatgtcctgcaaatgaaggagGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGGCACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTCAAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGGTTTGTGGAACAGTGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTATGTTAACCTACCTACCATTGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTGCGCATGCGTGGCACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCTGCTGCTGAGAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCCGCTCCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACTGGAGCGCTCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAAATAAACATCAGTTTCTAAAAGTTGTCTTCATTTAGTTTGCTTTTTACTCCAGATCAGAATACCTGGGATTGCATATCAAAGCATAATAATAAATACATGTCTCGACATGAGTTGTACTTCTAAA
>NM_002295.6
CTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGCGTTGTTCTGGATTCCCGTCGTAACTTAAAGGGAAATTTTCACAATGTCCggagcccttgatgtcctgcaaatgaaggagGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGGCACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTCAAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTATGTTAACCTACCTACCATTGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTGCGCATGCGTGGCACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCTGCTGCTGAGAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCCGCTCCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACTGGAGCGCTCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAAATAAACATCAGTTTCTAAAAGTTGTCTTCATTTAGTTTGCTTTTTACTCCAGATCAGAATACCTGGGATTGCATATCAAAGCATAATAATAAATACATGTCTCGACATGAGTTGTACTTCTAAA