Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name OTX2
Plot displaying the genomic locations of a parental gene (in chr14) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name orthodenticle homeobox 2
Also known as CPHD6|MCOPS5
Coordinate chr14:56799905-56810479
Strand -
Gene summary This gene encodes a member of the bicoid subfamily of homeodomain-containing transcription factors. The encoded protein acts as a transcription factor and plays a role in brain, craniofacial, and sensory organ development. The encoded protein also influences the proliferation and differentiation of dopaminergic neuronal progenitor cells during mitosis. Mutations in this gene cause syndromic microphthalmia 5 (MCOPS5) and combined pituitary hormone deficiency 6 (CPHD6). This gene is also suspected of having an oncogenic role in medulloblastoma. Alternative splicing results in multiple transcript variants encoding distinct isoforms. Pseudogenes of this gene are known to exist on chromosomes two and nine. [provided by RefSeq, Jul 2012]

Retrocopy(s) from OTX2

Retroname Coord Strand Genomic Region ENSG
OTX2P1 chr9:75724220-75724593 - Intergenic
ENSG00000234644 UCSC

Expression

Transcript Sequences

>NM_001270524.2
AGCAAATCTCCCTGAGAGCGGGACCGGCCTCAGCTCCAACACAGCCTCCACTGTGATTAAAAATAAAAATTGCTAGAGCAGCCCTCACTCGCCACATCTACTTTGTATGTATTGCAGAGGGGCCCACGCGTGTTTAGAACTCTAGCCGCCTTCCTCATTTTCGTTCTTTAAAAAAAATTTTTTTTGGTTGTGTTTGACTTTTCATGGAAGGGTGAAGACTGCAAGGTTTCTAACTCAATACTCTTGATTTCTTTTAGGATAGCTGGCTATTTGGAATTTAAAGGATATTTGACTTTTTCTAACCTCCCATGAGGCTGTAAGTTCCACTGCTCCAAACCCACCCACCAAGGACTCTGAACCTGTCCACCCCGGGCGCATCAAGATCTTCCAGCTGGGTACCCCCGATTTGGGCCGACTTTGCACCTCCAAACAACCTTAGCATGATGTCTTATCTTAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCCCTCCGTGGGCTACCCGGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGTTCACTCGGGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGCGAGAGGAGGTGGCACTGAAAATCAACTTGCCCGAGTCGAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAACAACAGCAACAACAGCAGAATGGAGGTCAAAACAAAGTGAGACCTGCCAAAAAGAAGACATCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACTCCCCCCTCTAGCACCTCAGTCCCGACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCACTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCATATTTGACCCCTATGCATCACCAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCCTGGAAGCTTAACTTCAATGCTGACTGCTTGGATTATAAAGATCAGACATCCTCGTGGAAATTCCAGGTTTTGTGAAGACCTGTAGAACCTCTTTTTGTGGGTGATTTTTAAATATACTGGGCTGGACATTCCAGTTTTAGCCAGGCATTGGTTAAAAGAGTTAGATGGGATGATGCTCAGACTCATCTGATCAAAGTTCCGAGAGGCATAGAAGGAAAAACGAAGGGCCTTAGAGGGGCCTACAAACCAGCAACATGAAATGGACAAACCAATCTGCTTAAGATCCTGTCATAGTTTTAGATCATTGGTTATCCTGATTTGCAAAGTGATCAAAAGCATTCTAGCCATGTGCAACCAAACACCACCAAAAATAAAATCAAACAAAACTAAGTTGTGAAGGAAGGGAGGGAAGGTCATAGCCTTCTTAAGCAGAGGTGTTCCATTGTTTTAGCCAATCCTTGGTTGAATCTTAGGAATGAACAGTGTCTCAAGCTCATTCACGTTTCATGACCAACTGGTAGTTGGCACTGAAAAAACTTTTCAGGGCTGTGTGAATTGTGTGACTGATTGTCCTAGATGCACTACTTTATTTAAAAAATAATGTTCATAAGGAGTCAATATGTAGTTTAAGAGACAATCAGTGTGTGTCTTATAAATGGTACATCTGTGGTTTTTAATCTGTGCTAGACTTCAAAACTGTGATCTCCTGTTATTGTATGCAACCTTGAACTCCACCTCTGCAGGGGTTCTTCTGTGATTAAATAGGTTATAATTATAAGCAAAATTCAGAGCAACTGAGTACTGATCTAAAAAGATTACCTTTGGCTGGAGGTGAGCTGCACTGAAACTTTACGACAAAATGTCTCTGGACAAAGAGAGTCAGAGAAGAGAAGCAAAAGGACACTAATTCATCTGTAATTTACTGTTGGTAAGCCTAGCAGTAAAGAGACATTGGTCAATTGCTCTGACCCTGATGAATTATTAAACTGAGATCATTGTCGTTTATGCTTGCAGATGTTAAATGGAAAAGTTATATATGCATAAACCTTTTCTTCCTGGATTTGGCAGATATGTATAATTATATTAAAATGGTTCTAGCACAACATTGGGTCCAGTTTAATTTTACACCGCTATTTATGAATAAGAAGCCTACATTCAGCCTTTCCTCCCCAAAACACGTTTTTCTTAGGACAGAGAGTAAATTAGCAAACTTATTTTTACTTTTTTTTTTTGCTAATCTATGCATAAAATAGATATGAATGACAGTGGTAGGTAGACTTTTTGTGACTTTCATCAGGATTGCTCTGAAATTGAGTTTGGAGAGCCTAACAACAAGATCTTGTTTTCCTTGCTTTTCCCTCCCTACTTCAAACCTGAACGATTTCTTAGGCACTTTATTAGAATGTTTTAAAATATATCAAGTTTTTAAGAGGGAGGAGGAGAATTGGAGTATCTCTGAAAACATGAGAATGACAAGAATTTCTTGTTACTATTCTCTTATTTGATTAAGGGGATTTTTTTTTTTTAACTTCCAAAAACTGAGGTAAACATGAGAGGGAGTGTAATCAGAATCTGAAAGTAATTCAGGCAGAAATGATTCCTGAACAAAAGAGTTTCAGAAAAGTTTTAAAACCTATAATTTCAGTAGTTGAACATAAGGCACCCTGGTCAGTTTGTGTGTATGTGTTTAAGAAAGTGCCGAGGGGGAAAAAATGGGTCCCTTTTCAGTTGTACCTGCATTTTGTAAACCAGTCACCAGAAAAGACAAATGGGCCAATGATCATGGTGCTCCTCAGGTAAAAGCAATATTTAATTTCATTTTAAGCTGCTTAAGCTCTTACAGCTGACCAAAATTAAGTGACTCTTGATTGTAACGTTTTAAATGAAGGTTAGCAGTTGCAACCA