Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name OTX2P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:75724220-75724593  UCSC
Coordinates (T2T) chr9:87880774-87881147  UCSC
Coordinates (hg19) chr9:78339136-78339509  UCSC
Strand -
Parental Sequence NM_001270524.2
Parental seq. overlap 308 bp
Parental seq. overlap (%) 9.8%
Genomic Region Intergenic
Retrocopy Summary OTX2P1, located on chr9:75724220-75724593, is a retrocopy of the parental gene OTX2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name OTX2
Full Name orthodenticle homeobox 2
Also known as CPHD6|MCOPS5
Coordinate chr14:56799905-56810479
Strand -
Gene summary This gene encodes a member of the bicoid subfamily of homeodomain-containing transcription factors. The encoded protein acts as a transcription factor and plays a role in brain, craniofacial, and sensory organ development. The encoded protein also influences the proliferation and differentiation of dopaminergic neuronal progenitor cells during mitosis. Mutations in this gene cause syndromic microphthalmia 5 (MCOPS5) and combined pituitary hormone deficiency 6 (CPHD6). This gene is also suspected of having an oncogenic role in medulloblastoma. Alternative splicing results in multiple transcript variants encoding distinct isoforms. Pseudogenes of this gene are known to exist on chromosomes two and nine. [provided by RefSeq, Jul 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes OTX2P1
Bonobo Pan paniscus OTX2P1
Gorilla Gorilla gorilla OTX2P1
Orangutan Pongo abelii OTX2P1
Gibbon Nomascus leucogenys OTX2P1
Green monkey Chlorocebus sabaeus OTX2P1
Crab-eating macaque Macaca fascicularis OTX2P1
Rhesus Macaca mulatta OTX2P1
Baboon Papio anubis OTX2P1
Golden snub-nosed monkey Rhinopithecus roxellana OTX2P1
Marmoset Callithrix jacchus OTX2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>OTX2P1
CCTCCAGACAACCTTGGCACGATGTCTTATCTTAAGTAACCACCCTACACAGTCAATGGGCTAAGCCTGAGCACTTTGGGTATGGACTTGCTGCACCCCTTGGTGGCTATCCGGCTATCCTCCTGGAAACAACACAGGGAGAGGACAACATTCACCTGGGAGCAACGACATGTGGTGGGACTGCTGTTTGCTAAGACCCAGTACTCAGCCATTTCCATGTGGGAGGAGGTAGTGCTGAAACTCAACTTGCCCAAGTCCAGGGTACAGGTATGGTTTAAGGAATGAAGAAGAGCTGAGTGCCGCCGACCACAGCAGTAACAACAAAATGGAAGTCAAAACAAAGCGAGACCTGCTATAAAGAAGCCATCTCCAGT
>NM_001270524.2
AGCAAATCTCCCTGAGAGCGGGACCGGCCTCAGCTCCAACACAGCCTCCACTGTGATTAAAAATAAAAATTGCTAGAGCAGCCCTCACTCGCCACATCTACTTTGTATGTATTGCAGAGGGGCCCACGCGTGTTTAGAACTCTAGCCGCCTTCCTCATTTTCGTTCTTTAAAAAAAATTTTTTTTGGTTGTGTTTGACTTTTCATGGAAGGGTGAAGACTGCAAGGTTTCTAACTCAATACTCTTGATTTCTTTTAGGATAGCTGGCTATTTGGAATTTAAAGGATATTTGACTTTTTCTAACCTCCCATGAGGCTGTAAGTTCCACTGCTCCAAACCCACCCACCAAGGACTCTGAACCTGTCCACCCCGGGCGCATCAAGATCTTCCAGCTGGGTACCCCCGATTTGGGCCGACTTTGCACCTCCAAACAACCTTAGCATGATGTCTTATCTTAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCCCTCCGTGGGCTACCCGGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGTTCACTCGGGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGCGAGAGGAGGTGGCACTGAAAATCAACTTGCCCGAGTCGAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAACAACAGCAACAACAGCAGAATGGAGGTCAAAACAAAGTGAGACCTGCCAAAAAGAAGACATCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACTCCCCCCTCTAGCACCTCAGTCCCGACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCACTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCATATTTGACCCCTATGCATCACCAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCCTGGAAGCTTAACTTCAATGCTGACTGCTTGGATTATAAAGATCAGACATCCTCGTGGAAATTCCAGGTTTTGTGAAGACCTGTAGAACCTCTTTTTGTGGGTGATTTTTAAATATACTGGGCTGGACATTCCAGTTTTAGCCAGGCATTGGTTAAAAGAGTTAGATGGGATGATGCTCAGACTCATCTGATCAAAGTTCCGAGAGGCATAGAAGGAAAAACGAAGGGCCTTAGAGGGGCCTACAAACCAGCAACATGAAATGGACAAACCAATCTGCTTAAGATCCTGTCATAGTTTTAGATCATTGGTTATCCTGATTTGCAAAGTGATCAAAAGCATTCTAGCCATGTGCAACCAAACACCACCAAAAATAAAATCAAACAAAACTAAGTTGTGAAGGAAGGGAGGGAAGGTCATAGCCTTCTTAAGCAGAGGTGTTCCATTGTTTTAGCCAATCCTTGGTTGAATCTTAGGAATGAACAGTGTCTCAAGCTCATTCACGTTTCATGACCAACTGGTAGTTGGCACTGAAAAAACTTTTCAGGGCTGTGTGAATTGTGTGACTGATTGTCCTAGATGCACTACTTTATTTAAAAAATAATGTTCATAAGGAGTCAATATGTAGTTTAAGAGACAATCAGTGTGTGTCTTATAAATGGTACATCTGTGGTTTTTAATCTGTGCTAGACTTCAAAACTGTGATCTCCTGTTATTGTATGCAACCTTGAACTCCACCTCTGCAGGGGTTCTTCTGTGATTAAATAGGTTATAATTATAAGCAAAATTCAGAGCAACTGAGTACTGATCTAAAAAGATTACCTTTGGCTGGAGGTGAGCTGCACTGAAACTTTACGACAAAATGTCTCTGGACAAAGAGAGTCAGAGAAGAGAAGCAAAAGGACACTAATTCATCTGTAATTTACTGTTGGTAAGCCTAGCAGTAAAGAGACATTGGTCAATTGCTCTGACCCTGATGAATTATTAAACTGAGATCATTGTCGTTTATGCTTGCAGATGTTAAATGGAAAAGTTATATATGCATAAACCTTTTCTTCCTGGATTTGGCAGATATGTATAATTATATTAAAATGGTTCTAGCACAACATTGGGTCCAGTTTAATTTTACACCGCTATTTATGAATAAGAAGCCTACATTCAGCCTTTCCTCCCCAAAACACGTTTTTCTTAGGACAGAGAGTAAATTAGCAAACTTATTTTTACTTTTTTTTTTTGCTAATCTATGCATAAAATAGATATGAATGACAGTGGTAGGTAGACTTTTTGTGACTTTCATCAGGATTGCTCTGAAATTGAGTTTGGAGAGCCTAACAACAAGATCTTGTTTTCCTTGCTTTTCCCTCCCTACTTCAAACCTGAACGATTTCTTAGGCACTTTATTAGAATGTTTTAAAATATATCAAGTTTTTAAGAGGGAGGAGGAGAATTGGAGTATCTCTGAAAACATGAGAATGACAAGAATTTCTTGTTACTATTCTCTTATTTGATTAAGGGGATTTTTTTTTTTTAACTTCCAAAAACTGAGGTAAACATGAGAGGGAGTGTAATCAGAATCTGAAAGTAATTCAGGCAGAAATGATTCCTGAACAAAAGAGTTTCAGAAAAGTTTTAAAACCTATAATTTCAGTAGTTGAACATAAGGCACCCTGGTCAGTTTGTGTGTATGTGTTTAAGAAAGTGCCGAGGGGGAAAAAATGGGTCCCTTTTCAGTTGTACCTGCATTTTGTAAACCAGTCACCAGAAAAGACAAATGGGCCAATGATCATGGTGCTCCTCAGGTAAAAGCAATATTTAATTTCATTTTAAGCTGCTTAAGCTCTTACAGCTGACCAAAATTAAGTGACTCTTGATTGTAACGTTTTAAATGAAGGTTAGCAGTTGCAACCA

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