Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name MRPS17
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name mitochondrial ribosomal protein S17
Also known as HSPC011|MRP-S17|RPMS17|S17mt
Coordinate chr7:55951877-55956500
Strand +
Gene summary Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S17P family. The encoded protein is moderately conserved between human mitochondrial and prokaryotic ribosomal proteins. Pseudogenes corresponding to this gene are found on chromosomes 1p, 3p, 6q, 14p, 18q, and Xq. [provided by RefSeq, Jul 2008]

Retrocopy(s) from MRPS17

Retroname Coord Strand Genomic Region ENSG
MRPS17P1 chr1:44991676-44992265 - Intergenic
ENSG00000268949 UCSC
MRPS17P10 chr18:57763719-57764242 - Intragenic
N/A UCSC
MRPS17P9 chrX:119379646-119380746 + Intergenic
ENSG00000227814 UCSC

Expression

Transcript Sequences

>NM_015969.3
ATCCCGCTGCGACCGGCGCTCCCCGGGGCAGGTGGCTGCATAGTCTTGGCGGAGGTGACCAAAGCCACGTAATGTCCGTAGTTCGCTCATCCGTCCATGCCAGATGGATTGTGGGGAAGGTGATTGGGACAAAAATGCAAAAGACTGCTAAAGTGAGAGTGACCAGGCTTGTTCTGGATCCCTATTTATTAAAGTATTTTAATAAGCGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCACAGTTGGGGATATTGTGCTTCTCAGAGCTTTACCTGTTCCACGAGCAAAGCATGTGAAACATGAACTGGCTGAGATCGTTTTCAAAGTTGGAAAAGTCATAGATCCAGTGACAGGAAAGCCCTGTGCTGGAACTACCTACCTGGAGAGTCCGTTGAGTTCGGAAACCACCCAGCTAAGCAAAAATCTGGAAGAACTCAATATCTCTTCAGCACAGTGAAGCGGGAGTGGAAGAAGGATCTAAAGGGAAAAACTGACATGTTTATGTTATGGAAAAAGAAATTTTTCTAAGTTTCATCACAAACTGTGTCCAGTTTCTCTGTGGTGTTTATGAAATAGCTAAAAGCAAATGAAGTAAAGGGCATACTATGGTTTTTCACAAAGGTTTATGGTCGTGTTTCAAATTTTCATCATTTCAGTGAACATACTTCCACGTTACATTAAGTGTGCCTAGCAGTCTGTTGCATTTTGTAAGCTCACAGttttttgttttgagatggaatctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaagctccgcctcccgggttcacgccgttctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccatgcccagctaatttttttttttttttttttggtatttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatctgcctgccttggcctctcagagtgctgggattacaggcgtgagccactgtgcTTAGCAAGCTCACTGTTTTAGAAGGttttatttttgtcttttgagacagggttttgctttgttgtgggggctggagtgcagtggtatgatcttggctcactgcagccttgacctccctggctctagcatctttccaccccagccttctgagtagctgggaacacaggagcgtaccactacacttggctgattttttgtaaattttgtagagacagggtctccctgtgttgcccaggttggtctcggactcctgggagcaatctgcccatcttggcctaacagtgctgggattacaggcctgagccactgtgcccagccGGTTTCCTTTATTTCATTCAAAGGAATTTTGAATTTATCTTAGAACCTTTATTTTGAAGGAAGAAAGTCttttttttttttgagctggagtttcactcttgttgcccaggctggagtgcaatggcatgatctcagcccaccacgacctccgcctcccaggttcaagtgattctgcttcagcctcctgagtagctaggattacaggcatgtgccaccacgcccagctaattttgtatttttagtagggatggggtttctccatgtttgtcaggctagtcttgaactccggacctcaggtgatccgcccgcctgggcctctcaaagtgcttggattacaggcatgagccactgcATGTAATGACCAGCCACTGGTCAGAATTCTTTCAATCAAGCTGTGTTAATAAGAATATTGATGTGTGGAAAATAAAATTTTACAATTCTG