Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RTRAF
Plot displaying the genomic locations of a parental gene (in chr14) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name RNA transcription, translation and transport factor
Also known as C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1
Coordinate chr14:51989546-52010694
Strand +
Gene summary Enables RNA binding activity; RNA polymerase II complex binding activity; and identical protein binding activity. Involved in negative regulation of protein kinase activity; positive regulation of transcription by RNA polymerase II; and tRNA splicing, via endonucleolytic cleavage and ligation. Located in microtubule cytoskeleton; nucleoplasm; and perinuclear region of cytoplasm. Part of tRNA-splicing ligase complex. [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from RTRAF

Retroname Coord Strand Genomic Region ENSG
RTRAFP1 chr2:111940117-111941055 - Intragenic
ENSG00000225496 UCSC
RTRAFP2 chr5:95440055-95440815 + Intragenic
ENSG00000225165 UCSC

Expression

Transcript Sequences

>NM_016039.3
CTCTCGCCGCGTCGCCGGTGCCTGCGCCTCCCGCTCCACCTCGCTTCTTCTCTCCCGGCCGAGGCCCGGGGGACCAGAGCGAGAAGCGGGGACCATGTTCCGACGCAAGTTGACGGCTCTCGACTACCACAACCCCGCCGGCTTCAACTGCAAAGATGAAACAGAATTTAGAAACTTCATCGTTTGGCTTGAAGACCAGAAAATCAGGCACTACAAGATTGAAGACAGAGGGAATTTAAGAAACATCCACAGCAGCGACTGGCCCAAGTTCTTTGAAAAGTATCTCAGAGATGTTAACTGTCCTTTCAAGATTCAAGATCGACAAGAAGCTATTGACTGGCTTCTTGGTTTAGCTGTTAGACTTGAATATGGAGATAATGCTGAAAAATACAAGGATTTAGTACCTGATAATTCAAAAACTGCTGACAATGCAACTAAAAATGCAGAACCATTGATCAATTTGGATGTAAATAATCCTGATTTTAAGGCTGGTGTGATGGCTTTGGCTAACCTGCTTCAGATTCAGCGTCATGATGATTACCTGGTAATGCTTAAGGCAATTCGGATTTTGGTTCAGGAGCGCCTGACACAGGATGCAGTTGCTAAGGCAAATCAAACAAAAGAGGGCTTACCTGTTGCTTTAGACAAACATATTCTTGGTTTTGACACAGGAGATGCAGTTCTTAATGAAGCTGCTCAAATTCTGCGATTGCTGCACATAGAGGAGCTCAGAGAGCTACAGACAAAAATCAACGAAGCCATAGTAGCTGTTCAGGCAATTATTGCTGATCCAAAGACAGACCACAGACTGGGAAAAGTTGGAAGATGAACACTTGAGGACTTCAGCTTCTCACCTACTTAGTACAGTTGGGAACCATACACTTCTGGCATGTTTGGAAATCAAAATGTCACATTCTCGGGGGAGGAAGCCCAGAAAATTGGGTATGTTCTAGAGATTTACCACCATTGCTTATTGCTTTTTTCTTTAATAAAGTTTAGGAAAGTAGAATTTTTATTATGTACTGTATGTTTGCATAAATCACCTTTCTCCTTTGTGGTTAAGGCATATATGCCAACCCCCAGCTTTGTCCTAGAGACAATATAGATCCTTAAGTCATAGGAAAACTTAAAACACTTTATTGGAGTAATCTAGAAAATTTTAAAATTGTTACATCTTTGGTATTTATAAATGTGATACTTTACTTTCTGTGGGTACTTCTATAGAGGCACTACAGGATCAGAAAATGCAAATTGAATCATTTTAGCACCTTTTGATATAAATAGAAATGCACTGATGCAGAGGTAAAAAATCTTAGAACTTTTGTTGGGAAACTATAAATAATTGGTCCTTTCCCATCAGTTCTGCATTGGCTTCTCCAACTGTCAAGGTTTAGGATTATATTGTTATATTGATCACATGTGCTTTAATTTCTTGGCCAGAAGGAATCCATGGCAAAAATCAGGTTTAGAGTCTTAAACTCTAATTCTTAGTTGAATGAATTTGATCTTTTAAATATTAATGATAAATGTTTACAAGAAGTTGCTTTAATAAGCAACAGTTAAAATTCTGTTACCTTTTTAAACTTGCAATAACAACCTTCATTTTTAAAAATACAGTAGTAAAGATTGAGGTATCAGCTTTTCACAAAAGTCTTTTTGCACTACAAAATGTTCATCTTGGATGCTCAGGAACGTCTAATGGCCAATTCCTTTTTTACTTTCTTTGCCTTTGCAGTCACTGTTCTTTAGGGTCCAGGTTCTGATTGTAAACTCCAAGTCttcctttacattactgtacttactttcttCCTGTGAGAGAAGAGCAGGGGTGGGACAGGGTGGTGGGTGAGTATATTGTAACCAAGTTGCAACAGCAAGTCTTTGCATTTTGTGTATAAACTAGGTAGATTTAAGGTAGTAAAGACTGGCCCTCAGGGCAGGAAGAAGGCAATGGTGGCAGTGTCACAGGCAGCAGGGGTAATCAAATACCATATATATCCCTTCTCTACCCTGCTAATTTAAAGGAGCATCCTAAAGCATACTTTTTACCTGTTGGGCAGTAGGGGTAGACTGCAGTTATCCCGTAGAGGTGAGATCGTTGTTCTGGGAGATACTCATCAGTAAACTGGCCACTATGTTTATTTACTGATACAACACCATCCCTGGTAACAGAAAGGAAGAGTGAATTCAGGGACAGTCATTTACTAGATAAAGAAGTCAGTCAGCCACAGAAAATCAGTTGCAATAGAGGAAAATTTCTGGCAGCCTTCTCTGTCCCAGGGCTGGTGCTAAAGCCATACTGAAGTTTGAAGACCATTGCTCTAAATCCATTGctcatctctagctgcatgttagaatcacatgatgagctatcaaaTCAGAGTTGTAGGGCATGGTGTAAAGGGCTTAGACTTTAATGTTCCACAGTTCCTCATTTGAGAACTAGTCTAAATAGTATTTTTCGGTCCCTCAGACAATATGTCCACAGTGTCAAAAGCCAACTTAAGCCCTGTAATATAGCTCATGGTATCAAGGGTAGTCTTATTCTCTAAAGAACATATTTAGATTAATATGCTCCCTTTTGAGACATTATCCAATAGCTTTGCTACTTTTTAAGCTATATGTGAGCAATACCATTCGATTTCTGGGTGAAGTAAAAGGATGATTTCAAAAACATGAAAGGATGAAAAACATCCTTGAAGGATCTTATCTGCCAATGAGGAGGTGATGAAACAAAAGCCTCAGAGGGCTTAATGAGTCAAGTCAGGTACTGACTTTTGGTAAAACAAGTGGTGTGTCCTCTGGAACAGTTGGCCTTTTCAGGCTTGTCCAGAATTTGTGGGGCTCACCTCCTCCAGTCTGTGTGGTAGAAGTGATCTGCATAGCTTACGATGCTGAAGGGGTACTTGAGGTTGTTTTGAATGACACGCCGTCCAGTTCCATCAGGTAGTGTACACTCCAGTTTTTTGGTTCCTTTTAAAACAAAGGGGGAAAATGAGGTCCTTCAGCTGCTTTGCCAAAAATGATAGTGACATAGTGATAGTGACACAGTGATAGAATGGGGAAATAGGATATTTTACTTCCATTACAGTCATAGATTAGCAACTGTAAAATTACCTGTCCTATTACTAGTCTCCAGTTTTTAGTAGAGATTCAAACTTTCAATCCTTTTTTGGAAGACAGGATTGCATTTACTGAAATCTGGTAAGTTTCTGCCAAAGTAGGGCATTAAACATAATTATTTTTATAATTTGTGTGATTTCAAGCCTTAGCTTATAAATTATAACATCTGGGTAAATACTTGCCCTTTGTAAGCTATGTCTATAATTACTGAGGCAACCTTTTAACCAAAATCCTTAGTATTTTTAAAATATTTTCTAGGTAGGAGGAAAAAAGTGACTAAAATGGTAACATAACTCATATTTCAATGTAAAGGAATCAGTCTTAAAAATTTTTACAATAGCTAAACCATTCAAGAATTTCCAAGTTTCACATTTCTCATGGAGCCGATTTAAATTTCAAATCCTTTTAAGAAATGTAACTTGTTTTAAACAACTGGGTTATAAAAGTGACCTATGTACATTAGGCCCTTTTATTAGATTACAAATTCAAGAACAGTCTTTTTCATATTCTTTAGTATAGAACTAGACACACAGCATTTTTTCAGTTGTGCTGATAAAAGCAAACAAATGTAGGTTGCTAATACCCATGTTATTACTGAAGGAAGCTACCCTGCTACAATGCTTTCCAAAGAATGTCCTTAGCATTATAACAGATGTTTATAGGTAAGTTATAGTGACCCTCTCCCCGCATAAGAATAACTTCACTTAAGTTTGTCAATTCAACAATGGCTAATTCTTTTAACTGTTAAAAATATGCCAGGCACTCATGGTCAGGCAAGCAGTACAAACTTACTGCTTGATATATCCTTCCCTCCACCCAAACCCCAGAAAGTTCATTTTAAGACTCATTTACTAGTACTTAAATTTACTAGTACTTAAAAGTTTACAGACCAAAGAAAGGAGATCTAAGTGATGGGATTTCATTTTGTAGTAAAATCTGTTAGTGCTCACATTCACTGTGATGAGAGGTTATCTATTTGCATTCCATCAGTAGTATTACCTGCATCTGCCCAGCAGAGCAGTTTAGAGAAAGGGTCAAAGGTTAAGCCATTGGGCAATCCAATGTCTGTATTGATCAGAATTCTTCTGTTTTCTCCATCTAAAGATGACGTTTCAATTTTAGGAGCTTCTCTATTCCAGTCTGTCCAGTACAAGTTGCTGTAAGTTAAAAATCAAGATTGTAAAAGAATAGCCATGTAGCCtgtggtaggcagcatctaagcagcccccagtgatctccatctcctcatgtattatagccttaagcaatccccttgagtttgggctgcattagtagtgtcttgcttcttctagtgcatagagtatagcagaagtgataggctatcactgccgatattcggtctcaaaaaactggtttctgccttaggggctctctcttgctccctttgagggaagctggatgccatgttgcaagctaccctgtaaaggggaacatgtgccaaggaactgatgtccttgagggctgttggccagagacattagtcttgcctgtagcccatgtgagcatgcttgggctgtgtcttccccgagctgagccttgtgatcactgcagtttggccattacctgattgcagccttgtgagagactccatgcctgagggagctcggtgaagacacacttggattcctgactcacagaaactgtgagactaaatgttatcttacactgctgagggtttgggcaatttcttacacagcagtaggtaactaatacaCAGCCATATTCCACTTTTACCTGTATCACAAGGTTTTCTGATTATTGTCACTATGTGGGAGAAGTCATTACTAAGTTACTATCAGAATCCCTGCCTCCAAGATACCCCTTGACTCAACTGCCCCAAAACCCTCCGTTTGTTGAAGTCTTGAATTGGATCTTGGGTTTTAGAATAGAAACAAATACAGCTGTTAGGAATGGCTTCGATACAAACTATGGAACTTGAAGAGATGTGGACCAGGGATTTGAGAAGGAAACTGTTCTTTCTTCTGCCAAAAATACAATTTGGTACTTGAAGGGGTACCTGGCACCCAGGGATGGAAACATTTTAAGTTAAGCACTTTACCTTTTAAATGCCACGTTAAAAATGAAATATATTCATAACAGATACTAACGAGGAAATATGGTCCTATTAAGTGGAAATAGGTTATAAGGAAACAAACAGGTTTATCGTTAGAGCAGAAATAATGTTGAAAGCACTTTTTATAAAATACTATTTTATAAAAGCTATAGAAGCTTTGAATAAATCAGTTGGGCTACAGAGAACCTCAGTGAGAGGAGAGGAAGAAACCATAGGTTTCCCCTGTTGCGAATTTCATCCCTTATGCCCAACAGATGAAGCAGAGAGAAGCTGAGAGCAAAAGCTAGAAAGCAGTTTCCACTTTGCGCTAAGGTGGAGGTGGCCAGAGGGTACAGCATGCATATCATTGCTTCATCGCTTCTGATCAGTCTCCTCCCCAAAATGATTTAATATCATCAACAACAATAAGTCTGAAACAAGCTCACACAGATATTTGGTGTAAATTATTTGGGGATTGCCAGAGGAAGAAAGTTGTAAAGGTGAAATCTATAGAAAGCAAATGAGAAATATGCAGGAAGGCTTGACAACCATTCTGTTACGCAGTTGAAGGAGATGTAATTACATGTGTTATATTGCAACCTGGTTCAAGGTGGGTTTTCTTTTTATTAAAAATTCAAGTCCTTTAGCATTTATATTTGCTGTCTGGATAAGAAAGTTCTACTTTCATATTTAAACTCATGGCTGTGATGTGGATTTCAGCTTAAAAGTATGCTTTTTCCCCAGACTCCAGAGACATGGCCAAAGTTTCATTGCCTACAAGATGGCAGCTCTCCCCAGTTTTCAGGTCAAGCACCAAGAAGGAATAAGGggccgggcgcagtggctcatacctataatcccagcactttgggaggccaaggcaggtggatcacccagggtcaggagttggagaccaaaatggcgaaaccctgtctcgactaaaaatacaaaaattagctgggcatggtggcacatgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccgggagatggaggttgtagtcagccgagactgtgccactgcaccccagcctcggcaacaaagcaagaccttgtctcaaaaaaaagaaaaaaaaaagaaaaaaGGACCTTCCAAATGTCCAAATGTCAGAAAGGCAAGCCTATGCAAAGAGTTTTTAAGAGGGCTATTAATTCCTGTTAAGTCAACTGGAATAGAGAAGGATACAGGTACTTTTCCTGTGTGTAGAACCCAAAGTTTGAAACCACCTTTGAGGCACTGCACTAAGTATTTCATAGTCAAAAAGCACTTACCTGAAAATTAAAGCTGAAGGTTTTCTTTACTGATTTGAAGGGCATCTGGGAATTTCATTTCGTAGAAACTCCACTTAAACATGGCAAGAGTTTCTCAAGATATAAAAATTCTCCCTGATTGTAACAAGTACTGAGACAGTGAACAAATCCTGTATGTCACATTTGATGACCTTAGCAATTATACAGACAGGGAAAATGTTTATCTTGATTTCTGCTACAGCAACACTGAAGCCAGAGGTGTCTGAGCTTTGGCTAATGTCACTTGATGTAGGTCAGCCCTACTGTGAGCGTCAACCCTGGTTTCTAAATGTGCTGCTGGAGGAATCCCACTTCACTTCCAGTTTAAGTGTCAGCTGAGGCCTCGCCTGATCATTTGATTCAGAGTAGCCCTAGTTCTCACAAcactatctgaattttctacatatcacatcacagactaatattgtttataccagtcttgtttcctcctaataaaatataagtgccatgaaagaa