Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps28
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S28
Also known as -
Coordinate chr17:34042010-34043536
Strand -
Gene summary Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including cardiovascular system; extraembryonic component; genitourinary system; hemolymphoid system; and vitelline vein. Human ortholog(s) of this gene implicated in Diamond Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps28

Retroname Coord Strand Genomic Region ENSG
Rps28P12 chr11:115620268-115620487 + Intergenic
ENSMUSG00000084130 UCSC
Rps28P16 chr12:7016673-7016976 - Intergenic
ENSMUSG00000111975 UCSC
Rps28P18 chr13:73465946-73466264 + Intergenic
ENSMUSG00000066407 UCSC
Rps28P1 chr2:4964270-4964586 - Intergenic
ENSMUSG00000069188 UCSC
Rps28P3 chr3:126241370-126241681 + Intergenic
ENSMUSG00000105233 UCSC
Rps28P4 chr3:131154205-131154399 + Intragenic
ENSMUSG00000104754 UCSC
Rps28P5 chr4:127034993-127035298 - Intergenic
ENSMUSG00000082220 UCSC
Rps28P6 chr5:113905160-113905475 + Intragenic
ENSMUSG00000105031 UCSC
Rps28P9 chr6:86310993-86311300 + Intergenic
ENSMUSG00000072940 UCSC
Rps28P10 chr7:75015779-75016098 + Intragenic
ENSMUSG00000069196 UCSC
Rps28P11 chr8:10979888-10980168 + Intergenic
ENSMUSG00000109480 UCSC
Rps28P20 chrX:141208316-141208612 + Intergenic
ENSMUSG00000081365 UCSC
Rps28P2 chr2:73367108-73367279 + Intergenic
N/A UCSC
Rps28P8 chr5:76518677-76518889 - Intergenic
N/A UCSC
Rps28P14 chr11:51073503-51073738 - Intergenic
N/A UCSC
Rps28P17 chr12:99575465-99575768 + Intergenic
N/A UCSC
Rps28P19 chr18:38775327-38775627 - Intragenic
N/A UCSC
Rps28P13 chr11:49486478-49486714 - Intergenic
ENSMUSG00000081791 UCSC
Rps28P7 chr5:134492070-134492392 + Intergenic
ENSMUSG00000072576 UCSC
Rps28P21 chrX:163646582-163646886 + Intergenic
ENSMUSG00000080834 UCSC
Rps28P15 chr11:52072605-52072842 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001355384.1
CTCGCGAGAGCGAAAGTGAGGCGTGGTCAGAGCCGACTATAAAAGGCATCCCCTGCTCACGTGACTCCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCCATCAAGCTGGCTAGGGTAACCAAAGTGCTGGGCAGGACCGGTTCGCAGGGACAGTGCACGCAGGTGCGAGTGGAATTCATGGATGACACCAGCCGCTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGAGGGTGACGTGCTCACCCTATTGGAGTCAGAAAGAGAAGCTCGAAGGTTGCGTTAATCTTGCAGCTGGTGGGGTTCTGGATATCCACTACTTAGCCCACGGAATGATCTGCAACTGTTAAATAAAGCATTTATATTAATTCTTGTCTAGAAA
>NM_016844.3
CTCGCGAGAGCGAAAGTGAGGCGTGGTCAGAGCCGACTATAAAAGGCATCCCCTGCTCACGTGACTCCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCCATCAAGCTGGCTAGGGTAACCAAAGTGCTGGGCAGGACCGGTTCGCAGGGACAGTGCACGCAGGTGCGAGTGGAATTCATGGATGACACCAGCCGCTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGAGGGTGACGTGCTCACCCTATTGGAGTCAGAAAGAGAAGCTCGAAGGTTGCGTTAATCTTGCAGCTGGGTTCTGGATATCCACTACTTAGCCCACGGAATGATCTGCAACTGTTAAATAAAGCATTTATATTAATTCTTGTCTAGAAA