Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name PSMC2
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name proteasome 26S subunit, ATPase 2
Also known as MSS1|Nbla10058|RPT1|S7
Coordinate chr7:103347524-103369395
Strand +
Gene summary The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes one of the ATPase subunits, a member of the triple-A family of ATPases which have a chaperone-like activity. This subunit has been shown to interact with several of the basal transcription factors so, in addition to participation in proteasome functions, this subunit may participate in the regulation of transcription. This subunit may also compete with PSMC3 for binding to the HIV tat protein to regulate the interaction between the viral protein and the transcription complex. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Mar 2011]

Retrocopy(s) from PSMC2

Retroname Coord Strand Genomic Region ENSG
PSMC2P1 chr3:132175333-132176811 + Intragenic
ENSG00000240854 UCSC
PSMC2P2 chr8:84678793-84679843 + Intragenic
ENSG00000253137 UCSC

Expression

Transcript Sequences

>NM_002803.4
AAGACACCACCGGAAGCAAGGAAGGTGCTGTGTAATCATTAAGGAGCGGAGGCTTTTGGAGCTGCTAAAATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGCCCATCCGAGctctggatgagggggatattgccttgttgaaaacttatGGTCAGAGCACTTACTCTAGGCAGATCAAGCAAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTCTGGGATTTGGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGGTTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAAATACATTATCAACGTAAAGCAGTTTGCCAAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGTGGGCGTGGATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGCAGGTGGAAGAGAAACCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCGGTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCTGAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACAATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTGCTGATGGCCACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGAATTTAGCTTGCCCGATCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAGATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAGGCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAACTGAACCCTGAAGGCTTTCAAGTGAAAACTTTAAATTGGAATCCTAACCTTATATAGACTTGTTAATAACCAATTCATAAACAAATAAATGGCTTCAAAATTGTATGCTTTTTTCCATATCTCTTCTTGTAATATAATAAAAGGTGATTTCTAATGTTATTAGGCAGAAAAGCTTGTTAGAATATATTTTGACTATTTTTTTGACCCACACCCGTTTAAGGATTTCACATCATACAAAGCGCTTGCTTAGATGGCTTCTATCCTAGGCATATGCTGGCCGGGTGCTCTACATATAAATTCTCATTGTATCCTCCCATCTGTCCACTGAGGAAGATTATCAAATGGATCTTCATCCAATGGATGCATAAACTTTCCTACTTACTTGTAGTGGCAAAGCTGGCTTTCAAGTACAAGTTTGTTGGCTCCATTACCTATGCTCCTATTATCCGCTTCTGTCCCGCAACAAAGTAGCTCACTTAGGCGTATGACCACATGCATTATGATAGTTTCCCACCACCATATTGAATAATAAAAGCTTTGGCCAAAGCTTTTTTAAAGTAGGAGAAACATTGGATGTATATGTTTTGCATTGCCATTTGATTTCAAATTAATCAGGAAGAATTAGTGATTTTAATGAGCAGTAAAGTGGTGCAATAAAGCAGAAAGAAAAATGTTCAGCCAGAAGTGAAAGACTAGTAAAAAAAGAAAAAAAAATATTTGTACATATGATCTAATTTAGAAAGTCCAGAATTGGCTTCATACAGAAAAGTGATTACTTTCATTTTACAAATTACTTTAAAATTTTGGTAAAGTTTCTGTTAGGCTTCTGGTCTACAGTGAGGTATTTTAAAAATAAAGGTTATATTAGAATCCTCAACATCTCTTTAAAATTACCTCCTGTGTAACCACCACCAAATCCTATCTTCTACCACAATTACCCCTTCCCCCAATGCCAAGACCAAAGCACAATAATGAATATTTTTATTGAAGTTCGATATTCATAAATAAGTTGCAAAATAAGAGTTGGATATATTTTTAATTCACAATAGAAAAAGTTGACAACATAGAAAATGCTGCTTTGCACTGAAATACTTAAAATTATGAAAGTTTTCAAGTAAAGAAATTAAAGCCTTTTATAAAATCCAACCAACATTCTTGATTTTTCATTTTTATGAACTTGATCAGAAAAATTCATCTTTTTTAACCCTGCCCTAATTTTTCTTGAGGAATTAAATAGAGCAAACTATTTTCAGGTTATGCTTACAATAAAATATACTTAAGAAAATGACTGAAGATGTATGTTTTTGAATGTTTTGATTAAATAAATGTACACATTTAGAACACA