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Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPL39
Plot displaying the genomic locations of a parental gene (in chrX) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein L39
Also known as L39|RPL39P42|RPL39_23_1806
Coordinate chrX:119786504-119791630
Strand -
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the S39E family of ribosomal proteins. It is located in the cytoplasm. In rat, the protein is the smallest, and one of the most basic, proteins of the ribosome. This gene is co-transcribed with the U69 small nucleolar RNA gene, which is located in its second intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPL39

Retroname Coord Strand Genomic Region ENSG
RPL39P25 chr10:75269302-75269594 - Intergenic
ENSG00000227271 UCSC
RPL39P41 chr1:1008063-1008235 - Intergenic
ENSG00000231702 UCSC
RPL39P6 chr1:11232913-11233225 + Intragenic
ENSG00000238173 UCSC
RPL39P46 chr1:112890595-112890971 - Intergenic
ENSG00000228040 UCSC
RPL39P26 chr11:13685406-13685704 - Intragenic
ENSG00000240454 UCSC
RPL39P61 chr12:25409272-25409473 - Intergenic
ENSG00000241846 UCSC
RPL39P47 chr1:239052574-239052949 - Intergenic
ENSG00000227854 UCSC
RPL39P42 chr1:25888986-25889191 + Intragenic
ENSG00000223624 UCSC
RPL39P28 chr12:68001356-68001599 - Intergenic
ENSG00000244432 UCSC
RPL39P29 chr13:102262932-102263165 - Intragenic
ENSG00000236860 UCSC
RPL39P62 chr14:23229868-23230165 - Intragenic
ENSG00000240131 UCSC
RPL39P63 chr15:25580919-25581217 + Intergenic
ENSG00000223628 UCSC
RPL39P64 chr15:93824950-93825247 - Intergenic
ENSG00000258627 UCSC
RPL39P31 chr16:71991112-71991357 - Intragenic
ENSG00000242176 UCSC
RPL39P65 chr16:87268137-87268448 + Intergenic
ENSG00000243705 UCSC
RPL39P66 chr17:35566467-35566780 + Intergenic
ENSG00000242660 UCSC
RPL39P67 chr17:39839274-39839573 - Intragenic
ENSG00000226117 UCSC
RPL39P33 chr17:56572994-56573276 + Intergenic
ENSG00000243058 UCSC
RPL39P68 chr18:3307417-3307697 - Intergenic
N/A UCSC
RPL39P69 chr18:69879842-69880027 + Intragenic
N/A UCSC
RPL39P43 chr1:91600121-91600500 + Intergenic
ENSG00000229067 UCSC
RPL39P38 chr19:18285169-18285542 - Intergenic
ENSG00000241464 UCSC
RPL39P44 chr1:93278852-93279175 - Intergenic
ENSG00000229567 UCSC
RPL39P34 chr19:52564030-52564335 + Intergenic
ENSG00000242255 UCSC
RPL39P45 chr1:99842560-99842857 + Intergenic
ENSG00000231996 UCSC
RPL39P chr20:56459333-56459632 - Intragenic
ENSG00000228601 UCSC
RPL39P39 chr20:57328499-57328790 + Intergenic
ENSG00000231005 UCSC
RPL39P16 chr2:108878308-108878555 + Intergenic
ENSG00000227470 UCSC
RPL39P40 chr21:17500583-17500873 - Intergenic
ENSG00000226580 UCSC
RPL39P48 chr2:197533822-197534060 + Intragenic
Intragenic
ENSG00000231699 UCSC
RPL39P14 chr2:202231647-202231954 + Intragenic
ENSG00000224463 UCSC
RPL39P70 chr22:37215645-37215935 - Intragenic
ENSG00000226233 UCSC
RPL39P15 chr2:70253681-70254055 - Intergenic
ENSG00000231414 UCSC
RPL39P49 chr3:13052858-13053171 - Intragenic
ENSG00000231362 UCSC
RPL39P5 chr3:134351840-134352137 - Intergenic
ENSG00000214289 UCSC
RPL39P50 chr3:187121052-187121349 - Intergenic
N/A UCSC
RPL39P51 chr3:196297952-196298244 - Intragenic
ENSG00000237418 UCSC
RPL39P18 chr3:20012402-20012698 + Intergenic
ENSG00000229468 UCSC
RPL39P52 chr5:36588509-36588753 + Intergenic
ENSG00000242292 UCSC
RPL39P53 chr5:74931619-74931925 + Intergenic
ENSG00000239517 UCSC
RPL39P54 chr5:80315621-80315929 + Intergenic
ENSG00000244076 UCSC
RPL39P3 chr6:73372926-73373313 - Intergenic
ENSG00000235174 UCSC
RPL39P55 chr7:50843490-50843777 - Intergenic
ENSG00000228085 UCSC
RPL39P58 chr8:101337448-101337742 + Intergenic
ENSG00000271560 UCSC
RPL39P59 chr8:127763652-127763818 + Intergenic
N/A UCSC
RPL39P56 chr8:52445392-52445767 + Intergenic
N/A UCSC
RPL39P57 chr8:97788116-97788408 - Intragenic
ENSG00000270682 UCSC
RPL39P60 chr9:132962461-132962755 + Intragenic
ENSG00000234907 UCSC
RPL39P71 chrX:74342711-74342862 - Intergenic
ENSG00000226515 UCSC

Expression

Transcript Sequences

>NM_001000.4
CCCTCCTCTTCCTTTCTCCGCCATCGTGGTGTGTTCTTGACTCCGCTGCTCGCCATGTCTTCTCACAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAATCGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATCAGGTACAACTCCAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACATGAGATGGCACACATATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAATGTCACCACTATCTGGAGATTTCGACGTGTTTTCCTCTCTGAATCTGTTATGAACACGTTGGTTGGCTGGATTCAGTAATAAATATGTAAGGCCTTTCTTTTTAA