Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPLP1
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein lateral stalk subunit P1
Also known as LP1|P1|RPP1
Coordinate chr15:69452818-69456205
Strand +
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal phosphoprotein that is a component of the 60S subunit. The protein, which is a functional equivalent of the E. coli L7/L12 ribosomal protein, belongs to the L12P family of ribosomal proteins. It plays an important role in the elongation step of protein synthesis. Unlike most ribosomal proteins, which are basic, the encoded protein is acidic. Its C-terminal end is nearly identical to the C-terminal ends of the ribosomal phosphoproteins P0 and P2. The P1 protein can interact with P0 and P2 to form a pentameric complex consisting of P1 and P2 dimers, and a P0 monomer. The protein is located in the cytoplasm. Two alternatively spliced transcript variants that encode different proteins have been observed. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPLP1

Retroname Coord Strand Genomic Region ENSG
RPLP1P10 chr10:59088660-59089016 - Intergenic
ENSG00000226888 UCSC
RPLP1P14 chr1:171824710-171824973 - Intergenic
ENSG00000224600 UCSC
RPLP1P15 chr1:240998408-240998832 - Intragenic
ENSG00000238085 UCSC
RPLP1P13 chr13:23373845-23374098 + Intragenic
ENSG00000232163 UCSC
RPLP1P24 chr14:39090633-39091138 + Intragenic
ENSG00000259121 UCSC
RPLP1P25 chr14:76968554-76969183 + Intergenic
ENSG00000243225 UCSC
RPLP1P11 chr17:16044491-16044996 + Intragenic
ENSG00000243686 UCSC
RPLP1P26 chr17:43169887-43170208 - Intergenic
ENSG00000267340 UCSC
RPLP1P27 chr19:53775468-53775809 + Intergenic
ENSG00000238150 UCSC
RPLP1P5 chr2:15869809-15870168 + Intergenic
ENSG00000214657 UCSC
RPLP1P16 chr2:176200870-176201383 - Intergenic
ENSG00000218175 UCSC
RPLP1P17 chr3:185276530-185276851 - Intergenic
N/A UCSC
RPLP1P18 chr4:60038414-60038621 + Intergenic
ENSG00000283043 UCSC
RPLP1P20 chr5:126627978-126628449 - Intergenic
ENSG00000230929 UCSC
RPLP1P6 chr5:151764946-151766369 - Intergenic
ENSG00000213433 UCSC
RPLP1P19 chr5:43348210-43348703 + Intergenic
ENSG00000188850 UCSC
RPLP1P21 chr6:136364065-136364498 + Intragenic
ENSG00000220660 UCSC
RPLP1P22 chr7:105189205-105189487 + Intragenic
ENSG00000270764 UCSC
RPLP1P23 chr8:26771674-26772037 + Intragenic
Intragenic
ENSG00000240519 UCSC

Expression

Transcript Sequences

>NM_001003.3
CCCCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGAAGCTAAGGCTGCGTTGGGGTGAGGCCCTCACTTCATCCGGCGACTAGCACCGCGTCCGGCAGCGCCAGCCCTACACTCGCCCGCGCCATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACAGTCACGGAGGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGACTAAACCTCTTTTATAACATGTTCAATAAAAAGCTGAACTTTACTGCTGTTGGTCTTGTCCATAGTTTTGGAATGTGCTCTGCAAAAATGGTCTGTTTTGTAATGTTGGCTTTCAGCCTATTCTGCCATGACACAGGCTGGATTTTCCCTGCCACCATTGCCGGATGTGAGATTTAGACAATCCTGATGCTAACAAGAAGGCACCTCATGGTACAGTGTTGAAAACTGCACTGGGGTGGCAGGAGGAAGGATCAGAGCAGATGCTTTGTCCAGGTTACCTGTGTAAACTTGATGATTATAAGGTGTGTCCCCTACACTGGGGGTGGAGGGTAATACAGACCAGCTTTAGAAAGCCTCCTGGGTATTTACCCTATACAACCCTGCCTAAGAACGAACTTTGACGTATGCTGAATGTTGACTGCTACATCCCAAGGTTGTAAAAAAACAAGACTTAGCTATGTAATGTCTCACCAAATGTTTGGGAGTTTTATGGTAACACTGAAGGAGTGCAGAAAGTTTACTTAATAGTTTATTAAGGTCTCCAGTTACACAAAGTGGAAAAAAAAAAAGATTCAAACCTGTGTTCCAAAAACTAAGAGCTTTTTTTGTTTGCCAATTAATAATACCATGAATGGAATTTTCAACTTTTCAGGCTTGGATTTATATAATAAACCGTGGGTATTGTGTGTTCAGAGCAGCTAA