Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPS20
Plot displaying the genomic locations of a parental gene (in chr8) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein S20
Also known as S20|uS10
Coordinate chr8:56067254-56074506
Strand -
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S10P family of ribosomal proteins. It is located in the cytoplasm. This gene is co-transcribed with the small nucleolar RNA gene U54, which is located in its second intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Two transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Apr 2009]

Retrocopy(s) from RPS20

Retroname Coord Strand Genomic Region ENSG
RPS20P35 chr1:101256282-101256659 + Intergenic
ENSG00000228399 UCSC
RPS20P44 chr11:47191145-47191656 - Intergenic
ENSG00000243802 UCSC
RPS20P45 chr11:77813282-77813793 - Intragenic
ENSG00000219529 UCSC
RPS20P36 chr1:203000060-203000210 + Intergenic
ENSG00000231547 UCSC
RPS20P31 chr12:120247514-120247759 + Intragenic
Intragenic
ENSG00000240925 UCSC
RPS20P47 chr12:130216940-130217220 - Intergenic
ENSG00000242963 UCSC
RPS20P46 chr12:7860523-7860765 + Intragenic
ENSG00000241828 UCSC
RPS20P32 chr13:27017529-27018028 - Intergenic
ENSG00000218198 UCSC
RPS20P48 chr15:50466658-50467135 + Intragenic
ENSG00000242737 UCSC
RPS20P5 chr1:57605823-57606276 - Intragenic
Intragenic
Intragenic
ENSG00000236888 UCSC
RPS20P49 chr17:38855196-38855701 + Intergenic
ENSG00000244086 UCSC
RPS20P50 chr18:11928852-11929035 + Intergenic
ENSG00000267661 UCSC
RPS20P34 chr1:81596114-81596584 - Intragenic
ENSG00000234683 UCSC
RPS20P37 chr2:112621772-112622281 - Intergenic
ENSG00000231747 UCSC
RPS20P1 chr21:35724709-35725166 - Intergenic
ENSG00000229761 UCSC
RPS20P13 chr2:148869987-148870451 - Intergenic
ENSG00000228848 UCSC
RPS20P12 chr2:234329412-234329873 + Intergenic
ENSG00000237784 UCSC
RPS20P9 chr2:62940031-62940322 + Intragenic
ENSG00000237162 UCSC
RPS20P10 chr2:71984140-71984434 - Intergenic
ENSG00000233971 UCSC
RPS20P14 chr3:186900081-186900593 + Intergenic
ENSG00000223803 UCSC
RPS20P39 chr5:108593500-108594000 + Intergenic
ENSG00000244245 UCSC
RPS20P4 chr5:150021530-150021992 - Intragenic
ENSG00000241907 UCSC
RPS20P40 chr5:177346077-177346460 + Intragenic
ENSG00000239393 UCSC
RPS20P38 chr5:96942894-96943222 + Intragenic
ENSG00000227836 UCSC
RPS20P42 chr6:110700625-110700920 + Intragenic
ENSG00000217041 UCSC
RPS20P41 chr6:37546554-37547279 - Intergenic
ENSG00000229559 UCSC
RPS20P43 chr7:152590550-152591016 - Intergenic
ENSG00000231139 UCSC
RPS20P23 chr8:100776506-100776793 - Intergenic
ENSG00000242399 UCSC
RPS20P22 chr8:38434359-38434741 - Intragenic
ENSG00000239218 UCSC
RPS20P21 chr8:73982119-73982510 + Intragenic
ENSG00000244295 UCSC
RPS20P24 chr9:72655799-72656268 - Intragenic
ENSG00000236862 UCSC
RPS20P25 chr9:81410326-81410653 + Intergenic
ENSG00000228375 UCSC
RPS20P33 chr14:105374671-105374839 + Intragenic
ENSG00000242085 UCSC

Expression

Transcript Sequences

>NM_001023.4
CTTTTTGAGGAAGACGCGGTCGTAAGGGCTGAGGATTTTTGGTCCGCACGCTCCTGCTCCTGACTCACCGCTGTTCGCTCTCGCCGAGGAACAAGTCGGTCAGGAAGCCCGCGCGCAACAGCCATGGCTTTTAAGGATACCGGAAAAACACCCGTGGAGCCGGAGGTGGCAATTCACCGAATTCGAATCACCCTAACAAGCCGCAACGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATAAGAGGCGCAAAAGAAAAGAATCTCAAAGTGAAAGGACCAGTTCGAATGCCTACCAAGACTTTGAGAATCACTACAAGAAAAACTCCTTGTGGTGAAGGTTCTAAGACGTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGAGCCAGGAGTTGAGGTGGAAGTCACCATTGCAGATGCTTAAGTCAACTATTTTAATAAATTGATGACCAGTTGTTAA
>NM_001146227.3
CTTTTTGAGGAAGACGCGGTCGTAAGGGCTGAGGATTTTTGGTCCGCACGCTCCTGCTCCTGACTCACCGCTGTTCGCTCTCGCCGAGGAACAAGTCGGTCAGGAAGCCCGCGCGCAACAGCCATGGCTTTTAAGGATACCGGAAAAACACCCGTGGAGCCGGAGGTGGCAATTCACCGAATTCGAATCACCCTAACAAGCCGCAACGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATAAGAGGCGCAAAAGAAAAGAATCTCAAAGTGAAAGGACCAGTTCGAATGCCTACCAAGACTTTGAGAATCACTACAAGAAAAACTCCTTGTGGTGAAGGTTCTAAGACGTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGAGCCAGGAGTTGAGttgatcgaatctacagatgcagaacccatggatacagagggccAGCAGTACACTTTGAGAAGTGTATTCGAATCCCCGGGGACATGTCCTTTTTAACTGCATTCTCCTCCGCCAAAAAAGTGACCAAGCAGagtctttctctgtcacccaggctggagtgcaatggcgtgatctcagctcactgcaacctctgcctcctgggttcaagtgattctcgtgtctcagcctcctgagtagctgagactacaggtgtgcaccagtgttcccagctgatttttgtattttatgtagagatggggttatgccattttggccaggctagtctcgaactcctgagctcaggtgatacacacacctcagcaaatcttttaaattatacattctgtgatatttccttgactttcttatccagcacttgtattgattatttttcattttgataatgttgggtttttaaaaactcctttatgatggaaaatttcaaacatacacaaaagtagagagagaatggtataataaacccactcagttttaaggattgtcaactaataccagttttatttcatgtatgactccaacaacttccccaaccagccttcagattatttgaaagcaaatttcagacatcgtattttactcatacattttctagtatctaaatctgaaagagactcttttCTAacagttctgtagcattaattatactcatactgttgtgcaacaaatatccagaaatcttttgtcttgcgaaactgaacctcttacccattaaacactaactcccttttttttcaccctgaaccattggcaaccacaattttactttctttttctgtgagtttgattacttgatacttcatgtgagtggaatcatataatatttgtctttttgtgactgacattttatttagcttaatgtcttcaagtttgacccataccatatcatgtggcaggatttttccctttttttttttttcagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccactaaacccggctaatttttttgtatttttagtagagacagagtttcaccatgttaatgaggatggtctccatctcctgacctcgtgattcgctcgtctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccatgatttttcttcttttttaaggctgaataatatctcaatgtatgtatatataccactttttaaaaattcattcatctgttggacatttagattgttcccacctcttggctattgtgaataatgctataataaacatgagtatgcaaata